LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
HOXC5
hsa-miR-190b
0.794
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000512206
Biotype: processed_transcript
Gene id: ENSG00000273046
Gene Name: HOXC5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1347-1365
0.033
9
RP11-884K10.7
hsa-miR-190b
0.794
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607783
Biotype: antisense
Gene id: ENSG00000271976
Gene Name: RP11-884K10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2342-2365
0.029
0
6mer
804-813
0.004
1
RP11-476K15.1
hsa-miR-190b
0.794
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583163
Biotype: lincRNA
Gene id: ENSG00000266602
Gene Name: RP11-476K15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-806
0.028
1
6mer
638-663
0.004
1
RP5-1025A1.3
hsa-miR-190b
0.794
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613001
Biotype: lincRNA
Gene id: ENSG00000275358
Gene Name: RP5-1025A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-294
0.033
0
MIR663AHG
hsa-miR-190b
0.794
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000593517
Biotype: retained_intron
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-226
0.033
Not Conserved
AC007246.3
hsa-miR-190b
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426083
Biotype: antisense
Gene id: ENSG00000231312
Gene Name: AC007246.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
629-651
0.022
1
8mer
920-936
0.006
Not Conserved
6mer
539-549
0.004
2
ZNF561-AS1
hsa-miR-190b
0.793
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1427-1445
0.025
0
6mer
1664-1681
0.008
0
RP11-383G10.5
hsa-miR-190b
0.793
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452599
Biotype: antisense
Gene id: ENSG00000225063
Gene Name: RP11-383G10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-246
0.021
1
7mer
148-165
0.012
0
RP13-653N12.1
hsa-miR-190b
0.792
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536341
Biotype: lincRNA
Gene id: ENSG00000256551
Gene Name: RP13-653N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
453-476
0.033
1
RP11-6B4.1
hsa-miR-190b
0.792
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482617
Biotype: lincRNA
Gene id: ENSG00000243694
Gene Name: RP11-6B4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
245-264
0.033
11
XLOC_006934
hsa-miR-190b
0.792
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014865
Biotype: transcript isomorph
Gene id: XLOC_006934
Gene Name: XLOC_006934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4178-4198
0.026
0
6mer
4284-4305
0.005
0
6mer
3302-3328
0.002
0
RP11-92B11.3
hsa-miR-190b
0.792
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578710
Biotype: antisense
Gene id: ENSG00000264673
Gene Name: RP11-92B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-257
0.033
0
RP13-143G15.3
hsa-miR-190b
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419926
Biotype: antisense
Gene id: ENSG00000227844
Gene Name: RP13-143G15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-527
0.032
3
ZNRD1-AS1
hsa-miR-190b
0.790
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5754-5775
0.009
0
6mer
9328-9353
0.009
1
6mer
337-361
0.004
0
6mer
438-454
0.004
0
7mer
3864-3882
0.003
0
6mer
3693-3708
0.002
0
6mer
8157-8180
0.001
0
XLOC_013016
hsa-miR-190b
0.790
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026960
Biotype: transcript isomorph
Gene id: XLOC_013016
Gene Name: XLOC_013016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-536
0.025
Not Conserved
8mer
370-395
0.007
Not Conserved
RP11-286B14.1
hsa-miR-190b
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411798
Biotype: lincRNA
Gene id: ENSG00000228971
Gene Name: RP11-286B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1058-1071
0.030
0
6mer
1213-1233
0.003
Not Conserved
OTX2-AS1
hsa-miR-190b
0.788
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000534909
Biotype: lincRNA
Gene id: ENSG00000248550
Gene Name: OTX2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2232-2248
0.027
3
6mer
2186-2196
0.005
1
RP11-22A3.2
hsa-miR-190b
0.788
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506899
Biotype: lincRNA
Gene id: ENSG00000250371
Gene Name: RP11-22A3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-137
0.032
0
CTB-46B19.2
hsa-miR-190b
0.788
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514207
Biotype: antisense
Gene id: ENSG00000249593
Gene Name: CTB-46B19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-34
0.032
0
CTD-2143L24.1
hsa-miR-190b
0.787
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512976
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-381
0.019
0
7mer
45-65
0.013
Not Conserved
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