LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
XLOC_001358
hsa-miR-190b
0.812
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003583
Biotype: transcript isomorph
Gene id: XLOC_001358
Gene Name: XLOC_001358
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1250-1268
0.035
1
LINC00562
hsa-miR-190b
0.812
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000566385
Biotype: lincRNA
Gene id: ENSG00000260388
Gene Name: LINC00562
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-362
0.029
1
6mer
27-45
0.005
0
TP73-AS1
hsa-miR-190b
0.811
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624167
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
21-43
0.035
Not Conserved
RP11-167H9.4
hsa-miR-190b
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472821
Biotype: antisense
Gene id: ENSG00000243944
Gene Name: RP11-167H9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-361
0.034
1
AC015849.19
hsa-miR-190b
0.808
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000603981
Biotype: antisense
Gene id: ENSG00000270871
Gene Name: AC015849.19
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-31
0.034
1
RP11-158G18.1
hsa-miR-190b
0.808
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607148
Biotype: sense_intronic
Gene id: ENSG00000272477
Gene Name: RP11-158G18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-358
0.034
8
XLOC_012664
hsa-miR-190b
0.807
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026615
Biotype: transcript isomorph
Gene id: XLOC_012664
Gene Name: XLOC_012664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2749-2769
0.026
1
6mer
230-254
0.008
4
LINC00847
hsa-miR-190b
0.806
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502162
Biotype: lincRNA
Gene id: ENSG00000245060
Gene Name: LINC00847
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1619-1645
0.034
Not Conserved
LINC01235
hsa-miR-190b
0.806
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000605459
Biotype: lincRNA
Gene id: ENSG00000270547
Gene Name: LINC01235
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
198-223
0.034
2
XLOC_014147
hsa-miR-190b
0.806
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029754
Biotype: transcript isomorph
Gene id: XLOC_014147
Gene Name: XLOC_014147
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
737-747
0.014
0
6mer
281-299
0.014
0
7mer
51-65
0.007
Not Conserved
XLOC_006731
hsa-miR-190b
0.806
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015245
Biotype: transcript isomorph
Gene id: XLOC_006731
Gene Name: XLOC_006731
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-378
0.020
0
8mer
247-271
0.013
0
RP11-624M8.1
hsa-miR-190b
0.805
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606001
Biotype: antisense
Gene id: ENSG00000237742
Gene Name: RP11-624M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
722-746
0.034
0
RP11-302F12.10
hsa-miR-190b
0.804
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510905
Biotype: antisense
Gene id: ENSG00000250541
Gene Name: RP11-302F12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-364
0.034
Not Conserved
XLOC_014388
hsa-miR-190b
0.804
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029350
Biotype: transcript isomorph
Gene id: XLOC_014388
Gene Name: XLOC_014388
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-259
0.026
3
6mer
447-456
0.008
5
RP5-971N18.3
hsa-miR-190b
0.802
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457707
Biotype: antisense
Gene id: ENSG00000229766
Gene Name: RP5-971N18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
627-654
0.034
0
RP11-2A4.4
hsa-miR-190b
0.802
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4407-4426
0.034
0
RP11-244F12.2
hsa-miR-190b
0.801
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558905
Biotype: antisense
Gene id: ENSG00000259627
Gene Name: RP11-244F12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
657-683
0.033
7
RP11-744K17.1
hsa-miR-190b
0.800
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2518-2533
0.026
1
7mer
3319-3337
0.008
0
SOX2-OT
hsa-miR-190b
0.798
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472856
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-308
0.021
1
8mer
307-326
0.012
Not Conserved
RP1-68D18.3
hsa-miR-190b
0.795
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532760
Biotype: antisense
Gene id: ENSG00000255004
Gene Name: RP1-68D18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-42
0.022
1
7mer
3-29
0.011
0
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