LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
AC004076.5
hsa-miR-190b
0.829
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620532
Biotype: antisense
Gene id: ENSG00000276449
Gene Name: AC004076.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3290-3313
0.035
0
6mer
706-725
0.002
0
CTA-929C8.9
hsa-miR-190b
0.826
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10721-10737
0.007
0
8mer
3122-3138
0.007
1
8mer+wobble
14832-14857
0.006
1
7mer
5643-5667
0.006
0
7mer
1922-1940
0.006
1
6mer
11655-11667
0.002
1
6mer
11868-11878
0.002
1
LINC00847
hsa-miR-190b
0.825
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501855
Biotype: lincRNA
Gene id: ENSG00000245060
Gene Name: LINC00847
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1681-1707
0.036
Not Conserved
RP11-25G10.2
hsa-miR-190b
0.824
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433455
Biotype: antisense
Gene id: ENSG00000232739
Gene Name: RP11-25G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
708-723
0.036
1
CTB-46B19.2
hsa-miR-190b
0.823
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510110
Biotype: antisense
Gene id: ENSG00000249593
Gene Name: CTB-46B19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-31
0.027
0
8mer+wobble
591-617
0.009
1
CLSTN2-AS1
hsa-miR-190b
0.823
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_108084.1
Biotype: antisense
Gene id: NR_108084.1 (gene)
Gene Name: CLSTN2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-61
0.027
7
6mer
39-49
0.009
5
RP11-262H14.3
hsa-miR-190b
0.823
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000438699
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
868-883
0.036
Not Conserved
LINC01240
hsa-miR-190b
0.822
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602434
Biotype: lincRNA
Gene id: ENSG00000270109
Gene Name: LINC01240
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-40
0.036
1
LINC00939
hsa-miR-190b
0.822
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502479
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-429
0.018
1
9mer
3585-3600
0.013
1
6mer
870-881
0.002
1
6mer
2975-2987
0.002
1
RP11-704M14.1
hsa-miR-190b
0.821
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505646
Biotype: antisense
Gene id: ENSG00000250696
Gene Name: RP11-704M14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2554-2568
0.030
0
6mer
2554-2574
0.005
1
LINC01099
hsa-miR-190b
0.820
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514736
Biotype: lincRNA
Gene id: ENSG00000251504
Gene Name: LINC01099
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
174-191
0.035
0
RP11-53O19.1
hsa-miR-190b
0.818
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508123
Biotype: antisense
Gene id: ENSG00000251141
Gene Name: RP11-53O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-386
0.035
0
RP11-736I10.1
hsa-miR-190b
0.817
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534388
Biotype: lincRNA
Gene id: ENSG00000255393
Gene Name: RP11-736I10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-438
0.035
1
XLOC_012931
hsa-miR-190b
0.817
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026873
Biotype: transcript isomorph
Gene id: XLOC_012931
Gene Name: XLOC_012931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1261-1284
0.032
2
6mer
1177-1199
0.003
Not Conserved
RP11-137H15.4
hsa-miR-190b
0.815
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619737
Biotype: lincRNA
Gene id: ENSG00000276008
Gene Name: RP11-137H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-602
0.020
0
7mer
869-884
0.012
0
6mer
827-849
0.003
1
RP13-126C7.1
hsa-miR-190b
0.814
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560531
Biotype: antisense
Gene id: ENSG00000259277
Gene Name: RP13-126C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-164
0.035
0
LINC00847
hsa-miR-190b
0.813
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501937
Biotype: lincRNA
Gene id: ENSG00000245060
Gene Name: LINC00847
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1667-1693
0.035
Not Conserved
RP11-354P17.15
hsa-miR-190b
0.813
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000569618
Biotype: lincRNA
Gene id: ENSG00000261696
Gene Name: RP11-354P17.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-175
0.022
0
7mer
468-480
0.013
0
AC010148.1
hsa-miR-190b
0.812
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413842
Biotype: lincRNA
Gene id: ENSG00000235726
Gene Name: AC010148.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1001-1017
0.024
1
8mer+wobble
276-298
0.006
0
6mer
651-668
0.003
0
6mer
519-530
0.002
Not Conserved
STEAP3-AS1
hsa-miR-190b
0.812
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454260
Biotype: antisense
Gene id: ENSG00000229867
Gene Name: STEAP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-196
0.018
1
9mer
1651-1677
0.017
0
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