LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
AC079630.2
hsa-miR-190b
0.839
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000417422
Biotype: lincRNA
Gene id: ENSG00000223914
Gene Name: AC079630.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
539-556
0.019
Not Conserved
7mer
427-440
0.011
0
6mer
123-143
0.007
1
TFAP2A-AS1
hsa-miR-190b
0.839
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000420777
Biotype: antisense
Gene id: ENSG00000229950
Gene Name: TFAP2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
428-452
0.038
11
PVRL3-AS1
hsa-miR-190b
0.838
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467426
Biotype: antisense
Gene id: ENSG00000242242
Gene Name: PVRL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
181-203
0.031
0
6mer
551-578
0.006
2
CLSTN2-AS1
hsa-miR-190b
0.837
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000513309
Biotype: antisense
Gene id: ENSG00000250433
Gene Name: CLSTN2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-68
0.027
7
6mer
46-56
0.010
5
RP11-909B2.1
hsa-miR-190b
0.837
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588074
Biotype: lincRNA
Gene id: ENSG00000266952
Gene Name: RP11-909B2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-66
0.031
0
6mer
923-947
0.003
1
6mer
1652-1667
0.003
1
NUTM2A-AS1
hsa-miR-190b
0.837
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420424
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2085-2101
0.030
0
6mer
2106-2127
0.005
0
6mer
905-931
0.002
Not Conserved
ZEB1-AS1
hsa-miR-190b
0.835
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450834
Biotype: antisense
Gene id: ENSG00000237036
Gene Name: ZEB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-193
0.037
3
XLOC_012865
hsa-miR-190b
0.835
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026184
Biotype: transcript isomorph
Gene id: XLOC_012865
Gene Name: XLOC_012865
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-63
0.031
0
6mer
920-944
0.003
1
6mer
1649-1664
0.003
1
RP11-524H19.2
hsa-miR-190b
0.835
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425089
Biotype: antisense
Gene id: ENSG00000224984
Gene Name: RP11-524H19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-476
0.037
2
LINC01315
hsa-miR-190b
0.834
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424852
Biotype: lincRNA
Gene id: ENSG00000229891
Gene Name: LINC01315
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-134
0.028
3
6mer
322-331
0.009
5
RP1-116K23.1
hsa-miR-190b
0.834
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542804
Biotype: lincRNA
Gene id: ENSG00000256763
Gene Name: RP1-116K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
468-483
0.034
Not Conserved
6mer
220-233
0.003
1
XLOC_000329
hsa-miR-190b
0.833
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001086
Biotype: transcript isomorph
Gene id: XLOC_000329
Gene Name: XLOC_000329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
35-50
0.037
0
RP11-716H6.1
hsa-miR-190b
0.833
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527100
Biotype: lincRNA
Gene id: ENSG00000255015
Gene Name: RP11-716H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
475-493
0.037
0
RP11-85G21.1
hsa-miR-190b
0.832
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449345
Biotype: lincRNA
Gene id: ENSG00000228239
Gene Name: RP11-85G21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
134-155
0.037
1
ERICH3-AS1
hsa-miR-190b
0.831
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000620678
Biotype: antisense
Gene id: ENSG00000234497
Gene Name: ERICH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-263
0.037
4
XLOC_007796
hsa-miR-190b
0.831
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016430
Biotype: transcript isomorph
Gene id: XLOC_007796
Gene Name: XLOC_007796
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-395
0.030
2
6mer
2057-2073
0.004
1
6mer
1002-1024
0.002
0
RMST
hsa-miR-190b
0.831
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541282
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1957-1971
0.019
1
7mer
1643-1667
0.014
1
6mer
1652-1671
0.003
1
LINC00621
hsa-miR-190b
0.831
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000577004
Biotype: lincRNA
Gene id: ENSG00000262619
Gene Name: LINC00621
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1127-1146
0.037
0
RP11-159D12.10
hsa-miR-190b
0.830
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584805
Biotype: lincRNA
Gene id: ENSG00000266290
Gene Name: RP11-159D12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-252
0.032
0
6mer
3352-3373
0.002
1
6mer
4401-4411
0.002
1
6mer
1457-1476
0.002
1
AC007880.1
hsa-miR-190b
0.830
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445865
Biotype: lincRNA
Gene id: ENSG00000234572
Gene Name: AC007880.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
857-872
0.023
1
6mer
131-157
0.007
2
8mer
823-838
0.006
1
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