LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
RP11-252E2.1
hsa-miR-190b
0.855
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000499110
Biotype: antisense
Gene id: ENSG00000247033
Gene Name: RP11-252E2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-97
0.040
11
LOC401557
hsa-miR-190b
0.854
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_046107.1
Biotype: lincRNA
Gene id: NR_046107.1 (gene)
Gene Name: LOC401557
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3623-3637
0.040
1
RP11-1191J2.2
hsa-miR-190b
0.854
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000598370
Biotype: antisense
Gene id: ENSG00000242686
Gene Name: RP11-1191J2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-83
0.040
1
XLOC_010769
hsa-miR-190b
0.854
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1600-1614
0.023
1
7mer
433-454
0.016
0
TFAP2A-AS1
hsa-miR-190b
0.853
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443546
Biotype: antisense
Gene id: ENSG00000229950
Gene Name: TFAP2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-511
0.039
11
XLOC_010634
hsa-miR-190b
0.852
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022035
Biotype: transcript isomorph
Gene id: XLOC_010634
Gene Name: XLOC_010634
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
689-704
0.021
0
8mer
1110-1132
0.018
Not Conserved
LINC01095
hsa-miR-190b
0.852
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507726
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
541-558
0.039
0
E2F3-IT1
hsa-miR-190b
0.851
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433182
Biotype: sense_intronic
Gene id: ENSG00000224707
Gene Name: E2F3-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-346
0.039
2
LINC01095
hsa-miR-190b
0.850
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512063
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
543-560
0.039
0
AC007246.3
hsa-miR-190b
0.850
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449569
Biotype: antisense
Gene id: ENSG00000231312
Gene Name: AC007246.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1957-1977
0.039
1
RP11-293A10.3
hsa-miR-190b
0.846
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437400
Biotype: antisense
Gene id: ENSG00000232971
Gene Name: RP11-293A10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-254
0.039
1
XLOC_013174
hsa-miR-190b
0.846
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-671
0.025
0
6mer
958-974
0.013
0
XLOC_007967
hsa-miR-190b
0.844
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017159
Biotype: transcript isomorph
Gene id: XLOC_007967
Gene Name: XLOC_007967
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-48
0.024
1
6mer
75-91
0.008
2
6mer
127-147
0.006
2
RP11-68I3.5
hsa-miR-190b
0.844
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581240
Biotype: antisense
Gene id: ENSG00000263370
Gene Name: RP11-68I3.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
74-94
0.038
3
AC092652.1
hsa-miR-190b
0.844
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000548051
Biotype: antisense
Gene id: ENSG00000231758
Gene Name: AC092652.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-57
0.038
5
TFAP2A-AS1
hsa-miR-190b
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_033910.1
Biotype: antisense
Gene id: NR_033910.1 (gene)
Gene Name: TFAP2A-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-458
0.038
11
XLOC_001162
hsa-miR-190b
0.842
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001776
Biotype: transcript isomorph
Gene id: XLOC_001162
Gene Name: XLOC_001162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
102-119
0.038
0
CTD-3051D23.1
hsa-miR-190b
0.840
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556430
Biotype: lincRNA
Gene id: ENSG00000258811
Gene Name: CTD-3051D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-66
0.038
1
CSMD2-AS1
hsa-miR-190b
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431046
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-437
0.038
4
RP11-89G4.1
hsa-miR-190b
0.839
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000612967
Biotype: antisense
Gene id: ENSG00000277192
Gene Name: RP11-89G4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-185
0.032
0
6mer
246-272
0.006
0
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