LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-147C23.1
hsa-miR-182-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000593954
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-147
0.025
2
MGC27345
hsa-miR-182-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3007-3025
0.007
4
8mer
2059-2073
0.006
1
7mer
1603-1617
0.003
1
6mer
9554-9576
0.003
1
7mer
2477-2497
0.003
0
6mer
3648-3674
0.001
1
6mer
4968-4985
0.001
2
RP11-379P15.1
hsa-miR-182-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2692-2707
0.019
10
6mer
1679-1694
0.002
1
6mer
2508-2528
0.002
1
6mer
2399-2420
0.002
0
CTD-2587H19.3
hsa-miR-182-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597355
Biotype: lincRNA
Gene id: ENSG00000269873
Gene Name: CTD-2587H19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-125
0.025
0
RP11-752G15.3
hsa-miR-182-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560650
Biotype: antisense
Gene id: ENSG00000259462
Gene Name: RP11-752G15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1231-1248
0.013
1
7mer
1921-1934
0.012
1
RP11-332J15.1
hsa-miR-182-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508881
Biotype: lincRNA
Gene id: ENSG00000249734
Gene Name: RP11-332J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-350
0.025
1
XLOC_006976
hsa-miR-182-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2398-2416
0.013
1
6mer
2388-2409
0.007
1
6mer
859-879
0.004
0
XLOC_000620
hsa-miR-182-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002260
Biotype: transcript isomorph
Gene id: XLOC_000620
Gene Name: XLOC_000620
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
124-138
0.015
1
6mer
899-918
0.007
0
6mer
624-647
0.003
Not Conserved
AP001372.2
hsa-miR-182-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526036
Biotype: lincRNA
Gene id: ENSG00000254837
Gene Name: AP001372.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2377-2404
0.017
0
7mer
2306-2315
0.008
Not Conserved
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