LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-478K15.6
hsa-miR-182-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000421190
Biotype: lincRNA
Gene id: ENSG00000230731
Gene Name: RP11-478K15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-649
0.022
6
6mer
2638-2660
0.002
1
6mer
1945-1961
0.001
1
LBX1-AS1
hsa-miR-182-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454527
Biotype: antisense
Gene id: ENSG00000227128
Gene Name: LBX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-246
0.025
1
RP11-541P9.3
hsa-miR-182-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509211
Biotype: antisense
Gene id: ENSG00000250061
Gene Name: RP11-541P9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-516
0.019
1
7mer
379-389
0.006
0
SC22CB-109E1.1
hsa-miR-182-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5814-5826
0.009
0
7mer
4891-4905
0.007
0
7mer
7780-7801
0.005
1
7mer
6063-6086
0.003
1
6mer
7479-7499
0.001
0
RP11-710C12.1
hsa-miR-182-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605849
Biotype: antisense
Gene id: ENSG00000271474
Gene Name: RP11-710C12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2412-2425
0.011
2
8mer
1537-1563
0.010
0
6mer
1277-1302
0.002
4
6mer
1846-1865
0.002
0
AC007099.1
hsa-miR-182-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451622
Biotype: antisense
Gene id: ENSG00000231172
Gene Name: AC007099.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
819-837
0.025
1
PCAT18
hsa-miR-182-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579458
Biotype: lincRNA
Gene id: ENSG00000265369
Gene Name: PCAT18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2019-2041
0.022
2
6mer
602-616
0.004
1
CH17-140K24.3
hsa-miR-182-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000623581
Biotype: lincRNA
Gene id: ENSG00000280336
Gene Name: CH17-140K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-164
0.019
1
6mer
315-340
0.007
1
MAPKAPK5-AS1
hsa-miR-182-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609228
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
360-374
0.020
1
6mer
107-128
0.005
0
RP11-234K24.3
hsa-miR-182-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441208
Biotype: antisense
Gene id: ENSG00000232406
Gene Name: RP11-234K24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-151
0.018
4
7mer
599-626
0.007
4
RP11-855C21.1
hsa-miR-182-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000524042
Biotype: sense_intronic
Gene id: ENSG00000253104
Gene Name: RP11-855C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-62
0.025
5
XLOC_009250
hsa-miR-182-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019440
Biotype: transcript isomorph
Gene id: XLOC_009250
Gene Name: XLOC_009250
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-175
0.025
1
RP11-1109F11.3
hsa-miR-182-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000605595
Biotype: lincRNA
Gene id: ENSG00000271327
Gene Name: RP11-1109F11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
614-630
0.018
1
6mer
561-570
0.004
0
6mer
557-583
0.003
0
LINC01271
hsa-miR-182-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441214
Biotype: lincRNA
Gene id: ENSG00000233077
Gene Name: LINC01271
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
571-586
0.016
9
6mer
1322-1335
0.005
4
6mer
108-127
0.004
0
RFX3-AS1
hsa-miR-182-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427722
Biotype: lincRNA
Gene id: ENSG00000232104
Gene Name: RFX3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-45
0.025
3
AC005614.3
hsa-miR-182-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598952
Biotype: antisense
Gene id: ENSG00000269296
Gene Name: AC005614.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3113-3138
0.021
1
6mer
2805-2819
0.005
1
LINC00925
hsa-miR-182-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000538734
Biotype: lincRNA
Gene id: ENSG00000255571
Gene Name: LINC00925
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1127-1142
0.017
3
7mer
728-749
0.008
5
RP11-136K7.3
hsa-miR-182-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518473
Biotype: lincRNA
Gene id: ENSG00000253985
Gene Name: RP11-136K7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-62
0.025
4
BBOX1-AS1
hsa-miR-182-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526061
Biotype: antisense
Gene id: ENSG00000254560
Gene Name: BBOX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-72
0.025
0
RP11-730K11.1
hsa-miR-182-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501964
Biotype: antisense
Gene id: ENSG00000246790
Gene Name: RP11-730K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1022-1034
0.015
2
6mer
2856-2876
0.007
4
6mer
788-797
0.004
3
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