LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-524N5.1
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000619068
Biotype: lincRNA
Gene id: ENSG00000276778
Gene Name: RP11-524N5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-537
0.009
0
7mer
1882-1894
0.005
4
6mer
3186-3208
0.004
0
6mer
2047-2071
0.003
9
6mer
3136-3158
0.003
0
6mer
2794-2820
0.002
Not Conserved
CTA-414D7.1
hsa-miR-182-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
686-696
0.006
1
7mer
8198-8220
0.006
1
7mer
5465-5479
0.005
0
7mer
306-320
0.005
Not Conserved
6mer
8983-8994
0.003
2
6mer
6573-6588
0.002
0
RP11-263K4.3
hsa-miR-182-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548575
Biotype: lincRNA
Gene id: ENSG00000257431
Gene Name: RP11-263K4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-60
0.026
4
RP11-552E10.1
hsa-miR-182-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558185
Biotype: antisense
Gene id: ENSG00000259588
Gene Name: RP11-552E10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-240
0.026
1
VWA8-AS1
hsa-miR-182-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000611103
Biotype: antisense
Gene id: ENSG00000278338
Gene Name: VWA8-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1567-1579
0.026
1
MCM3AP-AS1
hsa-miR-182-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_002776.3
Biotype: antisense
Gene id: NR_002776.3 (gene)
Gene Name: MCM3AP-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
183-206
0.026
Not Conserved
RP11-52A20.2
hsa-miR-182-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607611
Biotype: sense_intronic
Gene id: ENSG00000272033
Gene Name: RP11-52A20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
594-620
0.022
0
6mer
1024-1044
0.004
2
SLC8A1-AS1
hsa-miR-182-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599956
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
176-195
0.026
0
KIAA1614-AS1
hsa-miR-182-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415647
Biotype: antisense
Gene id: ENSG00000232586
Gene Name: KIAA1614-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
102-124
0.020
0
6mer
1119-1132
0.004
1
6mer
897-916
0.002
1
RP11-734K23.9
hsa-miR-182-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000618066
Biotype: lincRNA
Gene id: ENSG00000277701
Gene Name: RP11-734K23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-157
0.026
1
RP11-506B6.6
hsa-miR-182-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585611
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-166
0.026
1
MCM3AP-AS1
hsa-miR-182-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455567
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
183-206
0.026
Not Conserved
RP11-517I3.1
hsa-miR-182-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515808
Biotype: antisense
Gene id: ENSG00000250602
Gene Name: RP11-517I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-470
0.021
5
6mer
190-207
0.005
1
RP11-506N2.1
hsa-miR-182-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513551
Biotype: lincRNA
Gene id: ENSG00000251339
Gene Name: RP11-506N2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
651-673
0.016
1
6mer
861-872
0.006
0
6mer
644-660
0.004
1
RP11-506B6.6
hsa-miR-182-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585504
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-166
0.026
1
AC113607.2
hsa-miR-182-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445279
Biotype: lincRNA
Gene id: ENSG00000228799
Gene Name: AC113607.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-42
0.026
0
LINC01252
hsa-miR-182-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545239
Biotype: lincRNA
Gene id: ENSG00000247157
Gene Name: LINC01252
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-94
0.026
2
CTD-2021J15.1
hsa-miR-182-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000474798
Biotype: antisense
Gene id: ENSG00000239462
Gene Name: CTD-2021J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
83-101
0.026
0
XLOC_002128
hsa-miR-182-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005168
Biotype: transcript isomorph
Gene id: XLOC_002128
Gene Name: XLOC_002128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-414
0.023
1
6mer
807-827
0.003
1
SLC8A1-AS1
hsa-miR-182-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596532
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
273-292
0.026
0
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