LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
CTA-243E7.3
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624101
Biotype: antisense
Gene id: ENSG00000279548
Gene Name: CTA-243E7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2015-2029
0.015
1
7mer
52-68
0.009
0
6mer
1016-1027
0.002
1
XLOC_002803
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006963
Biotype: transcript isomorph
Gene id: XLOC_002803
Gene Name: XLOC_002803
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
291-309
0.018
1
7mer
687-700
0.008
1
RP11-244H18.3
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000611741
Biotype: lincRNA
Gene id: ENSG00000273558
Gene Name: RP11-244H18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
525-552
0.023
1
6mer
1544-1568
0.003
0
RP4-669H2.1
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000436286
Biotype: antisense
Gene id: ENSG00000231703
Gene Name: RP4-669H2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-127
0.026
0
TNRC6C-AS1
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_040071.1
Biotype: sense
Gene id: NR_040071.1 (gene)
Gene Name: TNRC6C-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
528-548
0.026
1
C1orf220
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000521244
Biotype: lincRNA
Gene id: ENSG00000213057
Gene Name: C1orf220
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-138
0.022
2
6mer
2191-2201
0.004
1
CTB-61M7.2
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594721
Biotype: lincRNA
Gene id: ENSG00000268734
Gene Name: CTB-61M7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-114
0.026
1
XLOC_000037
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000830
Biotype: transcript isomorph
Gene id: XLOC_000037
Gene Name: XLOC_000037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-71
0.026
1
RP11-379F4.4
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496842
Biotype: antisense
Gene id: ENSG00000240207
Gene Name: RP11-379F4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-561
0.026
3
AC073326.3
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451832
Biotype: sense_intronic
Gene id: ENSG00000228540
Gene Name: AC073326.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-96
0.026
1
RP11-1084E5.1
hsa-miR-182-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524134
Biotype: antisense
Gene id: ENSG00000253796
Gene Name: RP11-1084E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
331-348
0.026
5
SLC8A1-AS1
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597385
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
246-265
0.026
0
XLOC_005858
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012301
Biotype: transcript isomorph
Gene id: XLOC_005858
Gene Name: XLOC_005858
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-539
0.026
5
RMST
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548886
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-40
0.016
5
6mer
857-883
0.010
9
TNRC6C-AS1
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589217
Biotype: antisense
Gene id: ENSG00000204282
Gene Name: TNRC6C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-551
0.026
1
CTD-2382E5.1
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499478
Biotype: antisense
Gene id: ENSG00000246740
Gene Name: CTD-2382E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1048-1070
0.020
1
7mer
2021-2047
0.006
1
CNTFR-AS1
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436360
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
776-796
0.026
5
RMST
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538559
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
971-993
0.008
5
6mer
1994-2017
0.007
9
6mer
1700-1726
0.006
9
6mer
2089-2113
0.005
9
AC079613.1
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431708
Biotype: sense_overlapping
Gene id: ENSG00000223523
Gene Name: AC079613.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-96
0.026
6
SNHG10
hsa-miR-182-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500370
Biotype: antisense
Gene id: ENSG00000247092
Gene Name: SNHG10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-561
0.026
1
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