LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-251G23.5
hsa-miR-182-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609827
Biotype: antisense
Gene id: ENSG00000272604
Gene Name: RP11-251G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-237
0.015
0
6mer
2501-2520
0.007
2
7mer
1578-1595
0.004
0
MCM3AP-AS1
hsa-miR-182-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000444998
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
187-210
0.027
Not Conserved
XLOC_010177
hsa-miR-182-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020900
Biotype: transcript isomorph
Gene id: XLOC_010177
Gene Name: XLOC_010177
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
219-242
0.020
2
6mer
77-102
0.007
3
AC092198.1
hsa-miR-182-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000447651
Biotype: lincRNA
Gene id: ENSG00000223486
Gene Name: AC092198.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2118-2131
0.027
8
RP5-894A10.6
hsa-miR-182-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000602609
Biotype: sense_intronic
Gene id: ENSG00000270157
Gene Name: RP5-894A10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-141
0.022
1
7mer
497-516
0.005
Not Conserved
CTD-2171N6.1
hsa-miR-182-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592405
Biotype: lincRNA
Gene id: ENSG00000267013
Gene Name: CTD-2171N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-210
0.027
3
LINC01393
hsa-miR-182-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435981
Biotype: lincRNA
Gene id: ENSG00000225535
Gene Name: LINC01393
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
714-727
0.015
1
6mer
1137-1156
0.008
1
6mer
423-431
0.004
1
RP11-512C24.3
hsa-miR-182-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000325811
Biotype: lincRNA
Gene id: ENSG00000177596
Gene Name: RP11-512C24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-358
0.019
4
6mer
353-367
0.003
1
6mer
457-479
0.002
0
6mer
1712-1734
0.002
1
RP11-37B2.1
hsa-miR-182-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504145
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-170
0.012
0
6mer
352-373
0.007
1
8mer
1265-1285
0.007
0
INTS6-AS1
hsa-miR-182-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000601034
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2928-2938
0.022
2
7mer
1874-1887
0.005
0
XLOC_011157
hsa-miR-182-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3041-3054
0.021
0
6mer
740-766
0.003
0
6mer
2140-2158
0.002
Not Conserved
XLOC_003316
hsa-miR-182-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005474
Biotype: transcript isomorph
Gene id: XLOC_003316
Gene Name: XLOC_003316
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
968-978
0.023
1
6mer
706-721
0.004
0
RMST
hsa-miR-182-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541282
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-151
0.018
5
6mer
980-1006
0.005
9
6mer
1633-1648
0.003
1
XLOC_004363
hsa-miR-182-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009935
Biotype: transcript isomorph
Gene id: XLOC_004363
Gene Name: XLOC_004363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1169-1189
0.019
0
6mer
257-270
0.008
0
RBMS3-AS3
hsa-miR-182-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000413430
Biotype: antisense
Gene id: ENSG00000235904
Gene Name: RBMS3-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-41
0.020
1
6mer
579-602
0.006
2
MAPKAPK5-AS1
hsa-miR-182-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000590479
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-524
0.021
1
6mer
137-158
0.005
0
XLOC_005715
hsa-miR-182-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012166
Biotype: transcript isomorph
Gene id: XLOC_005715
Gene Name: XLOC_005715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-418
0.015
2
7mer
325-339
0.009
1
6mer
3189-3216
0.003
2
STARD13-AS
hsa-miR-182-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608803
Biotype: retained_intron
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
468-493
0.020
3
6mer
230-247
0.007
2
RP11-573G6.6
hsa-miR-182-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000566763
Biotype: lincRNA
Gene id: ENSG00000261671
Gene Name: RP11-573G6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-285
0.026
1
XLOC_000578
hsa-miR-182-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001294
Biotype: transcript isomorph
Gene id: XLOC_000578
Gene Name: XLOC_000578
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
476-497
0.015
0
7mer
422-437
0.007
0
6mer
143-168
0.005
2
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