LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008455
hsa-miR-182-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018163
Biotype: transcript isomorph
Gene id: XLOC_008455
Gene Name: XLOC_008455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-219
0.027
1
XLOC_011670
hsa-miR-182-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024348
Biotype: transcript isomorph
Gene id: XLOC_011670
Gene Name: XLOC_011670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-157
0.027
0
XLOC_009900
hsa-miR-182-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020237
Biotype: transcript isomorph
Gene id: XLOC_009900
Gene Name: XLOC_009900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-359
0.027
5
RP1-154K9.2
hsa-miR-182-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000411879
Biotype: lincRNA
Gene id: ENSG00000231772
Gene Name: RP1-154K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-438
0.011
0
6mer
72-90
0.006
1
6mer
845-866
0.005
1
6mer
522-548
0.004
1
AC015923.1
hsa-miR-182-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000431604
Biotype: antisense
Gene id: ENSG00000226797
Gene Name: AC015923.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
491-514
0.027
4
C12orf80
hsa-miR-182-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551332
Biotype: lincRNA
Gene id: ENSG00000257137
Gene Name: C12orf80
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-295
0.012
2
6mer
584-605
0.007
5
6mer
476-501
0.004
3
6mer
487-505
0.003
1
XLOC_011942
hsa-miR-182-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024654
Biotype: transcript isomorph
Gene id: XLOC_011942
Gene Name: XLOC_011942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-31
0.020
5
6mer
973-977
0.004
1
6mer
898-921
0.003
3
XLOC_009152
hsa-miR-182-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019914
Biotype: transcript isomorph
Gene id: XLOC_009152
Gene Name: XLOC_009152
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1289-1304
0.019
1
6mer
1235-1255
0.007
1
RP11-379B8.1
hsa-miR-182-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418567
Biotype: lincRNA
Gene id: ENSG00000226453
Gene Name: RP11-379B8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-143
0.027
2
PCGEM1
hsa-miR-182-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454040
Biotype: lincRNA
Gene id: ENSG00000227418
Gene Name: PCGEM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-654
0.023
9
6mer
294-306
0.004
2
NUTM2B-AS1
hsa-miR-182-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5732-5757
0.015
0
7mer
6150-6169
0.003
Not Conserved
7mer
4752-4771
0.003
0
6mer
2528-2538
0.002
1
6mer
4906-4921
0.002
0
6mer
4264-4284
0.002
0
LINC01122
hsa-miR-182-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427421
Biotype: lincRNA
Gene id: ENSG00000233723
Gene Name: LINC01122
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
417-439
0.027
10
LINC01235
hsa-miR-182-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000605459
Biotype: lincRNA
Gene id: ENSG00000270547
Gene Name: LINC01235
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-232
0.027
5
CTC-535M15.2
hsa-miR-182-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522189
Biotype: lincRNA
Gene id: ENSG00000253693
Gene Name: CTC-535M15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-408
0.027
0
RP11-179B2.2
hsa-miR-182-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608554
Biotype: antisense
Gene id: ENSG00000272572
Gene Name: RP11-179B2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-289
0.019
1
6mer
1412-1431
0.008
6
LINC00710
hsa-miR-182-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000441855
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-193
0.022
6
6mer
247-251
0.005
Not Conserved
RP11-33A14.1
hsa-miR-182-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000418585
Biotype: lincRNA
Gene id: ENSG00000223930
Gene Name: RP11-33A14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-393
0.027
1
RP1-249H1.4
hsa-miR-182-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038863.1
Biotype: lincRNA
Gene id: NR_038863.1 (gene)
Gene Name: RP1-249H1.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2262-2274
0.018
0
7mer
2312-2330
0.006
0
6mer
2154-2177
0.003
1
XLOC_006659
hsa-miR-182-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014012
Biotype: transcript isomorph
Gene id: XLOC_006659
Gene Name: XLOC_006659
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-80
0.027
1
AC062031.1
hsa-miR-182-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414967
Biotype: lincRNA
Gene id: ENSG00000233842
Gene Name: AC062031.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-393
0.027
0
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