LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
LINC01189
hsa-miR-182-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2187-2204
0.019
1
6mer
2417-2439
0.008
1
XLOC_009788
hsa-miR-182-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020456
Biotype: transcript isomorph
Gene id: XLOC_009788
Gene Name: XLOC_009788
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1282-1302
0.027
2
RP11-53B2.1
hsa-miR-182-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000624889
Biotype: TEC
Gene id: ENSG00000267529
Gene Name: RP11-53B2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
863-880
0.016
4
6mer
1645-1668
0.011
5
RP11-704J17.5
hsa-miR-182-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606160
Biotype: lincRNA
Gene id: ENSG00000272428
Gene Name: RP11-704J17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-34
0.027
7
RP11-539I5.1
hsa-miR-182-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000453491
Biotype: antisense
Gene id: ENSG00000225302
Gene Name: RP11-539I5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-737
0.017
2
6mer
298-313
0.004
0
7mer
2588-2604
0.004
1
6mer
3969-3988
0.003
1
CTD-2218G20.2
hsa-miR-182-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507693
Biotype: lincRNA
Gene id: ENSG00000248279
Gene Name: CTD-2218G20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
212-229
0.021
5
6mer
146-154
0.007
4
SPTY2D1-AS1
hsa-miR-182-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501599
Biotype: antisense
Gene id: ENSG00000247595
Gene Name: SPTY2D1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1133-1160
0.014
2
7mer
55-81
0.013
1
XLOC_006390
hsa-miR-182-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013751
Biotype: transcript isomorph
Gene id: XLOC_006390
Gene Name: XLOC_006390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
623-638
0.022
8
6mer
4253-4274
0.002
0
6mer
3893-3916
0.002
2
LINC00342
hsa-miR-182-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103734.1
Biotype: lincRNA
Gene id: NR_103734.1 (gene)
Gene Name: LINC00342
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1089-1110
0.023
0
6mer
2786-2801
0.004
0
ZNF503-AS1
hsa-miR-182-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000531808
Biotype: lincRNA
Gene id: ENSG00000226051
Gene Name: ZNF503-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-149
0.024
8
6mer
381-407
0.003
0
RP11-357D18.1
hsa-miR-182-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515184
Biotype: retained_intron
Gene id: ENSG00000250978
Gene Name: RP11-357D18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-129
0.016
3
7mer
615-636
0.011
1
ADAMTS9-AS1
hsa-miR-182-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597944
Biotype: antisense
Gene id: ENSG00000241158
Gene Name: ADAMTS9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
482-498
0.027
1
RP11-177H13.2
hsa-miR-182-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519692
Biotype: antisense
Gene id: ENSG00000253837
Gene Name: RP11-177H13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3549-3563
0.008
0
7mer
3569-3585
0.007
1
7mer
390-415
0.005
0
7mer
1786-1810
0.003
0
6mer
2619-2634
0.002
3
6mer
1234-1259
0.002
5
ALMS1-IT1
hsa-miR-182-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441587
Biotype: sense_intronic
Gene id: ENSG00000230002
Gene Name: ALMS1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-44
0.020
1
6mer
410-427
0.008
2
LINC01094
hsa-miR-182-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514130
Biotype: lincRNA
Gene id: ENSG00000251442
Gene Name: LINC01094
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-51
0.027
8
RP1-278O22.2
hsa-miR-182-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000418690
Biotype: lincRNA
Gene id: ENSG00000234900
Gene Name: RP1-278O22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-390
0.014
1
6mer
572-587
0.013
8
RP11-594N15.2
hsa-miR-182-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522302
Biotype: lincRNA
Gene id: ENSG00000254266
Gene Name: RP11-594N15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-54
0.023
4
6mer
1346-1360
0.004
1
LINC00951
hsa-miR-182-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038887.1
Biotype: lincRNA
Gene id: NR_038887.1 (gene)
Gene Name: LINC00951
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-357
0.013
Not Conserved
8mer
1367-1390
0.007
1
6mer
95-121
0.004
0
6mer
250-269
0.003
1
SPTY2D1-AS1
hsa-miR-182-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_038360.1
Biotype: antisense
Gene id: NR_038360.1 (gene)
Gene Name: SPTY2D1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1116-1143
0.014
2
7mer
38-64
0.013
1
RP11-219B4.7
hsa-miR-182-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000566000
Biotype: antisense
Gene id: ENSG00000260493
Gene Name: RP11-219B4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
794-816
0.023
1
6mer
1086-1107
0.004
1
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