LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
LBX1-AS1
hsa-miR-182-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000546988
Biotype: retained_intron
Gene id: ENSG00000227128
Gene Name: LBX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-448
0.028
1
XLOC_009577
hsa-miR-182-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019778
Biotype: transcript isomorph
Gene id: XLOC_009577
Gene Name: XLOC_009577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7611-7634
0.010
2
7mer
1586-1602
0.008
2
7mer
4177-4200
0.006
2
6mer
6768-6791
0.004
6
LINC01515
hsa-miR-182-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600848
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-745
0.028
0
RP11-212P7.2
hsa-miR-182-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608477
Biotype: lincRNA
Gene id: ENSG00000273270
Gene Name: RP11-212P7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-337
0.016
1
6mer
142-158
0.007
3
6mer
6397-6419
0.005
1
6mer
4757-4769
0.001
Not Conserved
XLOC_002176
hsa-miR-182-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004316
Biotype: transcript isomorph
Gene id: XLOC_002176
Gene Name: XLOC_002176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-366
0.028
2
XLOC_007101
hsa-miR-182-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015024
Biotype: transcript isomorph
Gene id: XLOC_007101
Gene Name: XLOC_007101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-239
0.028
6
RP11-297P16.4
hsa-miR-182-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509399
Biotype: lincRNA
Gene id: ENSG00000250920
Gene Name: RP11-297P16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-94
0.028
2
TCL6
hsa-miR-182-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000486671
Biotype: retained_intron
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2331-2348
0.025
5
6mer
551-567
0.002
1
LINC01268
hsa-miR-182-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434296
Biotype: lincRNA
Gene id: ENSG00000227502
Gene Name: LINC01268
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2262-2274
0.018
0
7mer
2312-2330
0.006
0
6mer
2154-2177
0.004
1
LINC01197
hsa-miR-182-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000508732
Biotype: lincRNA
Gene id: ENSG00000248441
Gene Name: LINC01197
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
465-492
0.025
0
6mer
362-379
0.003
1
DKFZP434L187
hsa-miR-182-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000455163
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-374
0.027
0
LINC00649
hsa-miR-182-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427447
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8405-8415
0.026
5
6mer
5557-5575
0.001
0
XLOC_007283
hsa-miR-182-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015920
Biotype: transcript isomorph
Gene id: XLOC_007283
Gene Name: XLOC_007283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1220-1231
0.027
2
LOC100131289
hsa-miR-182-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038929.1
Biotype: lincRNA
Gene id: NR_038929.1 (gene)
Gene Name: LOC100131289
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-159
0.022
1
6mer
87-102
0.005
0
CTD-2540L5.5
hsa-miR-182-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553982
Biotype: lincRNA
Gene id: ENSG00000259115
Gene Name: CTD-2540L5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-399
0.027
1
MAPKAPK5-AS1
hsa-miR-182-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609983
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-427
0.020
1
6mer
4-25
0.008
0
LINC01018
hsa-miR-182-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507582
Biotype: lincRNA
Gene id: ENSG00000250056
Gene Name: LINC01018
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-568
0.027
1
RP11-704M14.1
hsa-miR-182-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505646
Biotype: antisense
Gene id: ENSG00000250696
Gene Name: RP11-704M14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1342-1361
0.027
0
XLOC_004504
hsa-miR-182-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010056
Biotype: transcript isomorph
Gene id: XLOC_004504
Gene Name: XLOC_004504
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-40
0.027
3
LINC01197
hsa-miR-182-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_034095.1
Biotype: lincRNA
Gene id: NR_034095.1 (gene)
Gene Name: LINC01197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
461-488
0.025
0
6mer
358-375
0.003
1
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