LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-64D22.5
hsa-miR-182-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485020
Biotype: lincRNA
Gene id: ENSG00000250271
Gene Name: RP11-64D22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-212
0.024
2
6mer
73-92
0.005
0
XLOC_009680
hsa-miR-182-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020349
Biotype: transcript isomorph
Gene id: XLOC_009680
Gene Name: XLOC_009680
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
945-956
0.028
0
LINC00371
hsa-miR-182-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563710
Biotype: lincRNA
Gene id: ENSG00000226792
Gene Name: LINC00371
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1880-1897
0.012
8
7mer
2470-2492
0.007
1
6mer
635-655
0.007
8
6mer
1623-1640
0.002
4
AC092171.4
hsa-miR-182-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000444210
Biotype: lincRNA
Gene id: ENSG00000230733
Gene Name: AC092171.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2454-2469
0.020
9
6mer
2378-2391
0.008
9
FLJ46284
hsa-miR-182-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623616
Biotype: TEC
Gene id: ENSG00000248858
Gene Name: FLJ46284
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
257-281
0.024
1
7mer
3308-3324
0.004
Not Conserved
XLOC_013263
hsa-miR-182-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027223
Biotype: transcript isomorph
Gene id: XLOC_013263
Gene Name: XLOC_013263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2024-2038
0.028
0
C1orf140
hsa-miR-182-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439004
Biotype: lincRNA
Gene id: ENSG00000234754
Gene Name: C1orf140
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3999-4017
0.016
3
7mer
1220-1231
0.007
Not Conserved
8mer
1536-1549
0.003
Not Conserved
6mer
3064-3087
0.002
1
RP3-523K23.2
hsa-miR-182-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562834
Biotype: sense_overlapping
Gene id: ENSG00000261116
Gene Name: RP3-523K23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-39
0.028
2
AC012462.2
hsa-miR-182-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447835
Biotype: lincRNA
Gene id: ENSG00000225166
Gene Name: AC012462.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-136
0.028
3
XLOC_005542
hsa-miR-182-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012018
Biotype: transcript isomorph
Gene id: XLOC_005542
Gene Name: XLOC_005542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-356
0.028
1
AC125421.1
hsa-miR-182-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000455366
Biotype: lincRNA
Gene id: ENSG00000234721
Gene Name: AC125421.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1116-1142
0.024
0
6mer
322-349
0.003
2
6mer
1181-1205
0.001
0
GNG12-AS1
hsa-miR-182-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420587
Biotype: antisense
Gene id: ENSG00000232284
Gene Name: GNG12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1929-1941
0.012
9
6mer
1412-1434
0.004
7
6mer
1252-1266
0.004
6
6mer
1555-1579
0.004
3
6mer
190-206
0.003
0
RP11-486G15.2
hsa-miR-182-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000605506
Biotype: lincRNA
Gene id: ENSG00000271576
Gene Name: RP11-486G15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
664-685
0.028
0
XLOC_002432
hsa-miR-182-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004531
Biotype: transcript isomorph
Gene id: XLOC_002432
Gene Name: XLOC_002432
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
896-918
0.028
6
XIST
hsa-miR-182-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445814
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-283
0.028
3
RP1-125I3.2
hsa-miR-182-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455431
Biotype: antisense
Gene id: ENSG00000236528
Gene Name: RP1-125I3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
797-817
0.023
7
6mer
791-806
0.004
1
RP5-965G21.5
hsa-miR-182-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000614331
Biotype: antisense
Gene id: ENSG00000274507
Gene Name: RP5-965G21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-114
0.020
2
7mer
146-169
0.007
1
XLOC_009222
hsa-miR-182-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4969-4985
0.020
0
6mer
857-878
0.008
0
CTD-3046C4.1
hsa-miR-182-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521061
Biotype: lincRNA
Gene id: ENSG00000253205
Gene Name: CTD-3046C4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-391
0.028
6
RP11-1057B8.2
hsa-miR-182-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505083
Biotype: lincRNA
Gene id: ENSG00000251218
Gene Name: RP11-1057B8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1987-2006
0.012
1
7mer
1083-1105
0.009
2
7mer
811-824
0.007
3
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