LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-1E4.1
hsa-miR-182-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562143
Biotype: antisense
Gene id: ENSG00000260093
Gene Name: RP11-1E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3212-3234
0.017
5
6mer
3702-3725
0.008
5
6mer
3416-3430
0.004
0
RP11-344G13.1
hsa-miR-182-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503929
Biotype: lincRNA
Gene id: ENSG00000248872
Gene Name: RP11-344G13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
556-571
0.026
0
6mer
2720-2737
0.002
0
RP11-5N11.3
hsa-miR-182-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504817
Biotype: sense_intronic
Gene id: ENSG00000249114
Gene Name: RP11-5N11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
230-256
0.028
0
RP11-503E24.2
hsa-miR-182-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522190
Biotype: antisense
Gene id: ENSG00000254165
Gene Name: RP11-503E24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-32
0.028
2
RP11-551L14.4
hsa-miR-182-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613860
Biotype: antisense
Gene id: ENSG00000226472
Gene Name: RP11-551L14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
332-347
0.028
0
XLOC_010268
hsa-miR-182-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021007
Biotype: transcript isomorph
Gene id: XLOC_010268
Gene Name: XLOC_010268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-124
0.021
1
6mer
40-59
0.007
1
XLOC_011938
hsa-miR-182-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024646
Biotype: transcript isomorph
Gene id: XLOC_011938
Gene Name: XLOC_011938
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1925-1951
0.028
2
AC020571.3
hsa-miR-182-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433933
Biotype: antisense
Gene id: ENSG00000229056
Gene Name: AC020571.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1243-1265
0.013
1
7mer
35-57
0.009
Not Conserved
6mer
1170-1196
0.006
2
LARGE-AS1
hsa-miR-182-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445892
Biotype: retained_intron
Gene id: ENSG00000224973
Gene Name: LARGE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-332
0.028
0
AC079586.1
hsa-miR-182-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000375987
Biotype: lincRNA
Gene id: ENSG00000204460
Gene Name: AC079586.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1807-1825
0.024
2
6mer
745-762
0.002
1
6mer
948-965
0.002
0
RP11-847H18.2
hsa-miR-182-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501954
Biotype: antisense
Gene id: ENSG00000245482
Gene Name: RP11-847H18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1825-1842
0.018
6
8mer
1269-1289
0.008
Not Conserved
6mer
745-770
0.002
1
RP11-424M22.3
hsa-miR-182-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541892
Biotype: antisense
Gene id: ENSG00000256564
Gene Name: RP11-424M22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
233-260
0.014
9
6mer
503-523
0.014
9
AC007386.2
hsa-miR-182-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449259
Biotype: lincRNA
Gene id: ENSG00000237638
Gene Name: AC007386.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2545-2568
0.028
1
XLOC_005575
hsa-miR-182-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012041
Biotype: transcript isomorph
Gene id: XLOC_005575
Gene Name: XLOC_005575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
326-335
0.017
6
8mer
1018-1036
0.011
1
MCM3AP-AS1
hsa-miR-182-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000591223
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
202-225
0.028
Not Conserved
XLOC_013832
hsa-miR-182-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028459
Biotype: transcript isomorph
Gene id: XLOC_013832
Gene Name: XLOC_013832
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-84
0.028
2
LINC00938
hsa-miR-182-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-13
0.024
2
6mer
1133-1145
0.002
1
6mer
4774-4785
0.002
1
LARGE-AS1
hsa-miR-182-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_038950.1
Biotype: antisense
Gene id: NR_038950.1 (gene)
Gene Name: LARGE-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
821-835
0.028
0
XLOC_012851
hsa-miR-182-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026719
Biotype: transcript isomorph
Gene id: XLOC_012851
Gene Name: XLOC_012851
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
483-495
0.028
1
XLOC_000889
hsa-miR-182-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001546
Biotype: transcript isomorph
Gene id: XLOC_000889
Gene Name: XLOC_000889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
616-637
0.028
0
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