LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP1-111C20.4
hsa-miR-182-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607796
Biotype: antisense
Gene id: ENSG00000271913
Gene Name: RP1-111C20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-177
0.029
1
RP11-348P10.2
hsa-miR-182-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000606008
Biotype: lincRNA
Gene id: ENSG00000272077
Gene Name: RP11-348P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1000-1027
0.015
2
7mer
1597-1609
0.014
0
RFX3-AS1
hsa-miR-182-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457566
Biotype: lincRNA
Gene id: ENSG00000232104
Gene Name: RFX3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-124
0.029
3
XLOC_009153
hsa-miR-182-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019319
Biotype: transcript isomorph
Gene id: XLOC_009153
Gene Name: XLOC_009153
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1367-1381
0.029
0
CTD-2236F14.1
hsa-miR-182-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511327
Biotype: antisense
Gene id: ENSG00000249713
Gene Name: CTD-2236F14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1304-1316
0.029
2
RP11-403I13.5
hsa-miR-182-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443018
Biotype: lincRNA
Gene id: ENSG00000232721
Gene Name: RP11-403I13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2088-2109
0.027
0
6mer
1425-1452
0.002
1
XLOC_007800
hsa-miR-182-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016434
Biotype: transcript isomorph
Gene id: XLOC_007800
Gene Name: XLOC_007800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3881-3895
0.026
5
6mer
903-925
0.003
2
RP4-583P15.10
hsa-miR-182-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000447343
Biotype: antisense
Gene id: ENSG00000229299
Gene Name: RP4-583P15.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
427-445
0.029
2
RP11-195M16.1
hsa-miR-182-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415166
Biotype: antisense
Gene id: ENSG00000235005
Gene Name: RP11-195M16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
385-408
0.021
3
7mer
199-219
0.008
2
RP11-74K19.1
hsa-miR-182-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439878
Biotype: lincRNA
Gene id: ENSG00000235446
Gene Name: RP11-74K19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-143
0.029
2
GRM5-AS1
hsa-miR-182-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526448
Biotype: antisense
Gene id: ENSG00000255082
Gene Name: GRM5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4428-4444
0.010
3
7mer
3821-3829
0.010
2
7mer
2311-2337
0.009
4
XLOC_001621
hsa-miR-182-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
955-980
0.029
1
MED15P9
hsa-miR-182-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_033903.1
Biotype: antisense
Gene id: NR_033903.1 (gene)
Gene Name: MED15P9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1767-1789
0.026
0
6mer
1527-1551
0.003
1
XLOC_010881
hsa-miR-182-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022562
Biotype: transcript isomorph
Gene id: XLOC_010881
Gene Name: XLOC_010881
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-152
0.018
0
7mer
952-970
0.011
0
XLOC_009323
hsa-miR-182-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019114
Biotype: transcript isomorph
Gene id: XLOC_009323
Gene Name: XLOC_009323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2281-2292
0.017
0
7mer
1918-1940
0.006
3
6mer
2884-2903
0.004
3
6mer
1670-1674
0.001
1
TTN-AS1
hsa-miR-182-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419746
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2892-2917
0.019
12
7mer
1372-1388
0.010
8
LINC00486
hsa-miR-182-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414054
Biotype: lincRNA
Gene id: ENSG00000230876
Gene Name: LINC00486
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1259-1281
0.017
1
7mer
797-807
0.012
2
RP4-769N13.6
hsa-miR-182-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000476910
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1496-1520
0.018
Not Conserved
7mer
111-127
0.008
1
6mer
1433-1459
0.004
0
RP11-573E11.2
hsa-miR-182-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526616
Biotype: sense_intronic
Gene id: ENSG00000254983
Gene Name: RP11-573E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-99
0.029
1
RP11-399O19.9
hsa-miR-182-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562983
Biotype: sense_overlapping
Gene id: ENSG00000261438
Gene Name: RP11-399O19.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-127
0.024
0
6mer
220-245
0.005
1
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