LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
LINC01197
hsa-miR-182-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000614853
Biotype: lincRNA
Gene id: ENSG00000248441
Gene Name: LINC01197
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1697-1709
0.023
1
6mer
20-47
0.007
1
RP4-598P13.1
hsa-miR-182-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000502413
Biotype: antisense
Gene id: ENSG00000248458
Gene Name: RP4-598P13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-595
0.019
1
6mer
133-153
0.006
0
6mer
897-907
0.004
0
RP11-646I6.5
hsa-miR-182-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602927
Biotype: lincRNA
Gene id: ENSG00000269921
Gene Name: RP11-646I6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-100
0.030
0
AC022819.3
hsa-miR-182-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563495
Biotype: sense_intronic
Gene id: ENSG00000259921
Gene Name: AC022819.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
799-812
0.026
3
6mer
2930-2944
0.003
3
6mer
1675-1698
0.001
1
RP11-196H14.3
hsa-miR-182-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536455
Biotype: antisense
Gene id: ENSG00000255629
Gene Name: RP11-196H14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-367
0.030
9
XLOC_001323
hsa-miR-182-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004677
Biotype: transcript isomorph
Gene id: XLOC_001323
Gene Name: XLOC_001323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1282-1300
0.029
1
RP11-697E14.2
hsa-miR-182-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000446631
Biotype: antisense
Gene id: ENSG00000224700
Gene Name: RP11-697E14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-37
0.029
3
AC007652.1
hsa-miR-182-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441150
Biotype: lincRNA
Gene id: ENSG00000235464
Gene Name: AC007652.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-167
0.029
8
CYP4F35P
hsa-miR-182-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582957
Biotype: lincRNA
Gene id: ENSG00000265787
Gene Name: CYP4F35P
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1630-1651
0.029
0
RP11-206L10.9
hsa-miR-182-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591702
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
789-816
0.029
Not Conserved
TTLL11-IT1
hsa-miR-182-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000411790
Biotype: lincRNA
Gene id: ENSG00000237548
Gene Name: TTLL11-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
30-44
0.029
0
RP11-624J12.1
hsa-miR-182-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557246
Biotype: lincRNA
Gene id: ENSG00000258803
Gene Name: RP11-624J12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1995-2012
0.016
0
7mer
1116-1141
0.006
1
7mer
1167-1194
0.004
1
6mer
1712-1726
0.003
1
AC079466.1
hsa-miR-182-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4396-4419
0.020
1
6mer
603-624
0.009
1
XLOC_010720
hsa-miR-182-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022114
Biotype: transcript isomorph
Gene id: XLOC_010720
Gene Name: XLOC_010720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-191
0.029
0
SMAD1-AS2
hsa-miR-182-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508936
Biotype: antisense
Gene id: ENSG00000250582
Gene Name: SMAD1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
870-893
0.029
4
XLOC_008844
hsa-miR-182-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018946
Biotype: transcript isomorph
Gene id: XLOC_008844
Gene Name: XLOC_008844
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-127
0.029
2
XLOC_004209
hsa-miR-182-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008695
Biotype: transcript isomorph
Gene id: XLOC_004209
Gene Name: XLOC_004209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2915-2938
0.027
1
6mer
1210-1226
0.003
1
RP1-199J3.7
hsa-miR-182-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607332
Biotype: antisense
Gene id: ENSG00000272017
Gene Name: RP1-199J3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
401-417
0.029
10
CTD-2162K18.3
hsa-miR-182-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588717
Biotype: lincRNA
Gene id: ENSG00000267353
Gene Name: CTD-2162K18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-510
0.025
1
6mer
926-938
0.004
1
RP11-496I2.2
hsa-miR-182-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551932
Biotype: lincRNA
Gene id: ENSG00000257310
Gene Name: RP11-496I2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
853-866
0.017
3
6mer
2141-2158
0.006
2
6mer
579-595
0.005
1
6mer
955-959
0.002
Not Conserved
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