LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
CTD-2008L17.2
hsa-miR-182-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000382897
Biotype: lincRNA
Gene id: ENSG00000206129
Gene Name: CTD-2008L17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-212
0.028
7
6mer
1606-1619
0.002
0
SLC8A1-AS1
hsa-miR-182-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601679
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
374-393
0.026
0
6mer
50-72
0.004
0
MUC19
hsa-miR-182-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1900-1913
0.011
3
7mer
2058-2083
0.006
3
6mer
24461-24477
0.004
0
6mer
24019-24038
0.004
5
6mer
23862-23881
0.003
0
6mer
23291-23312
0.001
0
XLOC_010843
hsa-miR-182-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022347
Biotype: transcript isomorph
Gene id: XLOC_010843
Gene Name: XLOC_010843
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1975-1992
0.017
0
7mer
1096-1121
0.006
1
7mer
1147-1174
0.004
1
6mer
1692-1706
0.003
1
XLOC_001469
hsa-miR-182-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003675
Biotype: transcript isomorph
Gene id: XLOC_001469
Gene Name: XLOC_001469
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-306
0.030
3
MIR29B1
hsa-miR-182-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000432045
Biotype: lincRNA
Gene id: ENSG00000226380
Gene Name: MIR29B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-872
0.017
1
7mer
1428-1448
0.005
2
7mer
3906-3925
0.004
1
6mer
522-533
0.003
2
6mer
2022-2048
0.001
1
RP11-35G9.3
hsa-miR-182-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000619899
Biotype: antisense
Gene id: ENSG00000267040
Gene Name: RP11-35G9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-159
0.030
1
LINC01393
hsa-miR-182-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000467677
Biotype: lincRNA
Gene id: ENSG00000225535
Gene Name: LINC01393
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
583-596
0.024
1
6mer
292-300
0.006
1
XLOC_001079
hsa-miR-182-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000666
Biotype: transcript isomorph
Gene id: XLOC_001079
Gene Name: XLOC_001079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-469
0.030
5
XLOC_009929
hsa-miR-182-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020613
Biotype: transcript isomorph
Gene id: XLOC_009929
Gene Name: XLOC_009929
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-127
0.030
0
RP11-20I23.6
hsa-miR-182-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562232
Biotype: antisense
Gene id: ENSG00000261140
Gene Name: RP11-20I23.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-109
0.030
2
AC003991.3
hsa-miR-182-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447058
Biotype: antisense
Gene id: ENSG00000228113
Gene Name: AC003991.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
383-400
0.030
1
LINC01227
hsa-miR-182-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561719
Biotype: lincRNA
Gene id: ENSG00000260737
Gene Name: LINC01227
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
699-718
0.030
0
RP11-26J3.3
hsa-miR-182-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606512
Biotype: sense_intronic
Gene id: ENSG00000272518
Gene Name: RP11-26J3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
859-864
0.023
0
6mer
359-378
0.007
1
RP4-813D12.3
hsa-miR-182-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000412321
Biotype: lincRNA
Gene id: ENSG00000226308
Gene Name: RP4-813D12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1138-1165
0.027
3
6mer
384-404
0.003
1
AC023590.1
hsa-miR-182-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000449065
Biotype: antisense
Gene id: ENSG00000225885
Gene Name: AC023590.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-334
0.012
1
7mer
28-54
0.011
1
6mer
285-300
0.004
0
6mer
342-365
0.004
0
RP11-418J17.1
hsa-miR-182-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440150
Biotype: antisense
Gene id: ENSG00000231365
Gene Name: RP11-418J17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1428-1451
0.023
0
7mer
1982-2000
0.006
1
OR2A1-AS1
hsa-miR-182-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000498397
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-314
0.024
0
6mer
1147-1162
0.006
3
RP4-639J15.1
hsa-miR-182-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000426169
Biotype: lincRNA
Gene id: ENSG00000236102
Gene Name: RP4-639J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-338
0.030
6
RP11-441O15.3
hsa-miR-182-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416191
Biotype: lincRNA
Gene id: ENSG00000224934
Gene Name: RP11-441O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2919-2930
0.021
4
7mer
939-950
0.008
2
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