LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-109I13.2
hsa-miR-182-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601195
Biotype: retained_intron
Gene id: ENSG00000235020
Gene Name: RP11-109I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
687-712
0.030
8
ARAP1-AS2
hsa-miR-182-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500163
Biotype: antisense
Gene id: ENSG00000245148
Gene Name: ARAP1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-394
0.021
5
7mer
1275-1297
0.010
1
RP11-15H20.6
hsa-miR-182-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397094
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
943-969
0.030
1
XLOC_012712
hsa-miR-182-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026360
Biotype: transcript isomorph
Gene id: XLOC_012712
Gene Name: XLOC_012712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-106
0.030
1
XLOC_004761
hsa-miR-182-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010286
Biotype: transcript isomorph
Gene id: XLOC_004761
Gene Name: XLOC_004761
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-331
0.030
7
LOC102467080
hsa-miR-182-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104658.1
Biotype: lincRNA
Gene id: NR_104658.1 (gene)
Gene Name: LOC102467080
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-147
0.025
1
6mer
60-86
0.006
2
RNASEH1-AS1
hsa-miR-182-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038430.1
Biotype: antisense
Gene id: NR_038430.1 (gene)
Gene Name: RNASEH1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1327-1345
0.030
1
ERVMER61-1
hsa-miR-182-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429725
Biotype: lincRNA
Gene id: ENSG00000230426
Gene Name: ERVMER61-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1634-1656
0.030
1
RP11-164J13.1
hsa-miR-182-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000466369
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
348-371
0.026
5
6mer
1035-1058
0.004
8
RP11-1020M18.10
hsa-miR-182-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548135
Biotype: antisense
Gene id: ENSG00000257500
Gene Name: RP11-1020M18.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-215
0.030
1
LINC01227
hsa-miR-182-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565215
Biotype: lincRNA
Gene id: ENSG00000260737
Gene Name: LINC01227
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-38
0.030
4
XLOC_002585
hsa-miR-182-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5110-5135
0.013
7
7mer
3390-3411
0.007
2
7mer
1239-1255
0.004
0
6mer
1089-1106
0.003
1
6mer
1531-1549
0.002
5
6mer
1551-1568
0.001
0
CTC-340A15.2
hsa-miR-182-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519901
Biotype: antisense
Gene id: ENSG00000241956
Gene Name: CTC-340A15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
380-400
0.025
3
6mer
224-236
0.006
2
RP6-102O10.1
hsa-miR-182-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422038
Biotype: lincRNA
Gene id: ENSG00000227935
Gene Name: RP6-102O10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
697-707
0.030
2
XLOC_000329
hsa-miR-182-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001086
Biotype: transcript isomorph
Gene id: XLOC_000329
Gene Name: XLOC_000329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
734-757
0.030
6
XLOC_005414
hsa-miR-182-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011913
Biotype: transcript isomorph
Gene id: XLOC_005414
Gene Name: XLOC_005414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3526-3540
0.016
3
7mer
100-123
0.005
Not Conserved
7mer
1731-1744
0.005
1
6mer
3129-3138
0.003
1
6mer
1458-1475
0.002
3
AC107079.1
hsa-miR-182-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416509
Biotype: lincRNA
Gene id: ENSG00000224844
Gene Name: AC107079.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-172
0.030
1
RP11-1275H24.1
hsa-miR-182-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610122
Biotype: lincRNA
Gene id: ENSG00000234432
Gene Name: RP11-1275H24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2477-2493
0.022
1
6mer
2624-2644
0.004
1
6mer
1918-1934
0.004
3
CTB-107G13.1
hsa-miR-182-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422488
Biotype: antisense
Gene id: ENSG00000234715
Gene Name: CTB-107G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2570-2592
0.030
1
RP11-333I13.1
hsa-miR-182-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000568862
Biotype: lincRNA
Gene id: ENSG00000260977
Gene Name: RP11-333I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1392-1410
0.026
2
6mer
694-711
0.004
2
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