LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
NNT-AS1
hsa-miR-182-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513560
Biotype: antisense
Gene id: ENSG00000248092
Gene Name: NNT-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1386-1410
0.011
1
7mer
4546-4557
0.008
2
7mer
1082-1108
0.006
1
6mer
737-753
0.003
1
6mer
670-679
0.002
1
XLOC_002368
hsa-miR-182-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005258
Biotype: transcript isomorph
Gene id: XLOC_002368
Gene Name: XLOC_002368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3152-3163
0.019
1
6mer
163-189
0.003
0
6mer
82-97
0.003
1
7mer
2858-2884
0.003
1
6mer
3518-3534
0.001
1
6mer
3038-3058
0.001
1
AP000235.2
hsa-miR-182-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441009
Biotype: lincRNA
Gene id: ENSG00000226983
Gene Name: AP000235.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2597-2615
0.031
3
RP11-139H15.5
hsa-miR-182-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611214
Biotype: sense_intronic
Gene id: ENSG00000276533
Gene Name: RP11-139H15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
320-345
0.031
2
RP11-553E24.2
hsa-miR-182-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563990
Biotype: lincRNA
Gene id: ENSG00000260477
Gene Name: RP11-553E24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-72
0.031
7
FGF14-AS2
hsa-miR-182-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606448
Biotype: lincRNA
Gene id: ENSG00000272143
Gene Name: FGF14-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-322
0.013
3
7mer
476-494
0.007
0
6mer
911-929
0.006
2
6mer
398-423
0.004
2
AC004066.3
hsa-miR-182-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514879
Biotype: antisense
Gene id: ENSG00000250522
Gene Name: AC004066.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
203-224
0.031
1
LOC101926935
hsa-miR-182-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2351-2374
0.016
0
6mer
2604-2626
0.006
0
6mer
220-233
0.004
Not Conserved
6mer
255-278
0.004
Not Conserved
6mer
2039-2054
0.002
Not Conserved
RP11-358B23.7
hsa-miR-182-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617211
Biotype: sense_intronic
Gene id: ENSG00000278829
Gene Name: RP11-358B23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-518
0.015
1
8mer
569-593
0.012
0
6mer
665-681
0.003
Not Conserved
ZFY-AS1
hsa-miR-182-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417305
Biotype: antisense
Gene id: ENSG00000233070
Gene Name: ZFY-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
87-113
0.031
0
XLOC_010490
hsa-miR-182-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021896
Biotype: transcript isomorph
Gene id: XLOC_010490
Gene Name: XLOC_010490
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
879-906
0.031
1
RP11-286E11.1
hsa-miR-182-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499098
Biotype: antisense
Gene id: ENSG00000245293
Gene Name: RP11-286E11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2394-2403
0.031
3
RP11-347I19.7
hsa-miR-182-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613093
Biotype: lincRNA
Gene id: ENSG00000274292
Gene Name: RP11-347I19.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
645-657
0.016
7
6mer
2247-2260
0.008
9
6mer
283-304
0.007
7
XLOC_011565
hsa-miR-182-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023768
Biotype: transcript isomorph
Gene id: XLOC_011565
Gene Name: XLOC_011565
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-330
0.031
1
XLOC_006016
hsa-miR-182-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013381
Biotype: transcript isomorph
Gene id: XLOC_006016
Gene Name: XLOC_006016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
254-277
0.015
10
6mer
1457-1473
0.005
6
6mer
437-452
0.005
2
6mer
719-742
0.003
3
6mer
905-927
0.002
2
XLOC_005183
hsa-miR-182-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011704
Biotype: transcript isomorph
Gene id: XLOC_005183
Gene Name: XLOC_005183
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
658-675
0.023
2
7mer
214-233
0.008
0
CTA-228A9.4
hsa-miR-182-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
844-865
0.013
2
7mer
17255-17269
0.005
1
7mer
2354-2373
0.005
1
6mer
2998-3013
0.002
2
6mer
1301-1326
0.002
1
6mer
18395-18415
0.001
0
6mer
1631-1641
0.001
1
6mer
7724-7749
0.001
Not Conserved
6mer
3034-3060
0.001
0
XLOC_001668
hsa-miR-182-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
925-939
0.030
0
RP1-102E24.8
hsa-miR-182-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541888
Biotype: lincRNA
Gene id: ENSG00000256433
Gene Name: RP1-102E24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1610-1624
0.023
1
7mer
1386-1403
0.007
0
AC005518.2
hsa-miR-182-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448131
Biotype: sense_intronic
Gene id: ENSG00000230190
Gene Name: AC005518.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1071-1092
0.030
2
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