LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
CTD-3096M3.2
hsa-miR-182-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581798
Biotype: lincRNA
Gene id: ENSG00000266288
Gene Name: CTD-3096M3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
411-436
0.031
1
LINC01192
hsa-miR-182-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470546
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
737-763
0.027
0
6mer
1109-1117
0.004
0
RP11-164J13.1
hsa-miR-182-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000483208
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
348-371
0.027
5
6mer
757-780
0.005
8
RP4-782L23.2
hsa-miR-182-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443012
Biotype: antisense
Gene id: ENSG00000226883
Gene Name: RP4-782L23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-607
0.031
6
RP11-440I14.3
hsa-miR-182-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507483
Biotype: lincRNA
Gene id: ENSG00000251584
Gene Name: RP11-440I14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-236
0.031
2
RP11-91I20.3
hsa-miR-182-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000526470
Biotype: lincRNA
Gene id: ENSG00000228862
Gene Name: RP11-91I20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1629-1649
0.026
2
6mer
491-512
0.004
0
6mer
1114-1137
0.002
1
RP11-298I3.1
hsa-miR-182-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548322
Biotype: antisense
Gene id: ENSG00000257285
Gene Name: RP11-298I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
391-407
0.018
1
7mer
529-541
0.013
1
RP4-646N3.1
hsa-miR-182-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000432359
Biotype: lincRNA
Gene id: ENSG00000235806
Gene Name: RP4-646N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-749
0.022
4
6mer
940-959
0.004
2
6mer
744-758
0.004
1
RP11-110L15.2
hsa-miR-182-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546414
Biotype: lincRNA
Gene id: ENSG00000257683
Gene Name: RP11-110L15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-52
0.031
5
RP11-164J13.1
hsa-miR-182-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000495723
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
348-371
0.027
5
6mer
757-780
0.005
8
LINC00710
hsa-miR-182-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428520
Biotype: lincRNA
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
599-609
0.013
6
7mer
297-308
0.010
Not Conserved
6mer
940-966
0.005
1
6mer
663-667
0.003
Not Conserved
RP11-164J13.1
hsa-miR-182-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549793
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
348-371
0.027
5
6mer
757-780
0.005
8
AC009299.2
hsa-miR-182-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445372
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-349
0.031
8
XIST
hsa-miR-182-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602863
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-135
0.031
3
RP11-425M5.7
hsa-miR-182-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620327
Biotype: sense_intronic
Gene id: ENSG00000276603
Gene Name: RP11-425M5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-63
0.031
4
KMT2E-AS1
hsa-miR-182-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024586.1
Biotype: lincRNA
Gene id: NR_024586.1 (gene)
Gene Name: KMT2E-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
340-367
0.027
2
6mer
880-890
0.002
0
6mer
2535-2544
0.002
2
RP5-890E16.2
hsa-miR-182-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578660
Biotype: retained_intron
Gene id: ENSG00000263412
Gene Name: RP5-890E16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2342-2365
0.031
Not Conserved
RP11-446H18.5
hsa-miR-182-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599131
Biotype: lincRNA
Gene id: ENSG00000239828
Gene Name: RP11-446H18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-142
0.023
0
6mer
300-327
0.006
1
6mer
143-166
0.002
Not Conserved
RP11-1069G10.2
hsa-miR-182-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557900
Biotype: lincRNA
Gene id: ENSG00000259727
Gene Name: RP11-1069G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
683-705
0.031
2
LOC101928505
hsa-miR-182-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104668.1
Biotype: lincRNA
Gene id: NR_104668.1 (gene)
Gene Name: LOC101928505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1186-1208
0.018
1
7mer
959-977
0.013
1
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