LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-4L24.3
hsa-miR-182-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000619442
Biotype: lincRNA
Gene id: ENSG00000275450
Gene Name: RP11-4L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2485-2501
0.017
0
7mer
2771-2784
0.011
0
7mer
633-655
0.004
0
XLOC_003172
hsa-miR-182-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006549
Biotype: transcript isomorph
Gene id: XLOC_003172
Gene Name: XLOC_003172
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-115
0.032
1
XLOC_001121
hsa-miR-182-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001746
Biotype: transcript isomorph
Gene id: XLOC_001121
Gene Name: XLOC_001121
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
566-587
0.032
0
AC078842.3
hsa-miR-182-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438969
Biotype: lincRNA
Gene id: ENSG00000228031
Gene Name: AC078842.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
403-421
0.032
4
XLOC_011754
hsa-miR-182-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024862
Biotype: transcript isomorph
Gene id: XLOC_011754
Gene Name: XLOC_011754
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
554-575
0.015
2
7mer
309-329
0.010
1
7mer
439-456
0.007
1
XXbac-BPG154L12.4
hsa-miR-182-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425033
Biotype: antisense
Gene id: ENSG00000225914
Gene Name: XXbac-BPG154L12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3064-3079
0.027
0
6mer
3080-3095
0.005
0
RP11-161M6.2
hsa-miR-182-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568394
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-50
0.018
2
8mer
1446-1466
0.010
0
6mer
304-330
0.005
2
AP001171.1
hsa-miR-182-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000436373
Biotype: lincRNA
Gene id: ENSG00000233236
Gene Name: AP001171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
698-711
0.026
0
6mer
451-470
0.007
1
RP11-53B5.1
hsa-miR-182-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443771
Biotype: lincRNA
Gene id: ENSG00000231990
Gene Name: RP11-53B5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-229
0.032
1
RP11-96D1.11
hsa-miR-182-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571197
Biotype: antisense
Gene id: ENSG00000262160
Gene Name: RP11-96D1.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
664-686
0.023
0
6mer
2690-2710
0.007
6
6mer
1414-1440
0.002
4
RP11-136K7.2
hsa-miR-182-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502659
Biotype: lincRNA
Gene id: ENSG00000250387
Gene Name: RP11-136K7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
850-864
0.018
1
7mer
1930-1941
0.011
0
6mer
2339-2351
0.003
0
LINC00856
hsa-miR-182-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434974
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-257
0.022
9
7mer
2231-2244
0.010
1
RP11-161M6.2
hsa-miR-182-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565467
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-50
0.018
2
8mer
1823-1843
0.009
0
6mer
304-330
0.005
2
XLOC_008554
hsa-miR-182-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018782
Biotype: transcript isomorph
Gene id: XLOC_008554
Gene Name: XLOC_008554
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1097-1118
0.024
5
6mer
1248-1264
0.006
1
6mer
1129-1149
0.003
0
XLOC_003522
hsa-miR-182-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008057
Biotype: transcript isomorph
Gene id: XLOC_003522
Gene Name: XLOC_003522
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-120
0.032
1
CTB-113D17.1
hsa-miR-182-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609389
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
575-591
0.032
1
XLOC_003674
hsa-miR-182-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008213
Biotype: transcript isomorph
Gene id: XLOC_003674
Gene Name: XLOC_003674
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
542-567
0.032
3
LINC00221
hsa-miR-182-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619530
Biotype: lincRNA
Gene id: ENSG00000270816
Gene Name: LINC00221
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
547-571
0.022
Not Conserved
7mer
266-279
0.010
0
ERVMER61-1
hsa-miR-182-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614505
Biotype: lincRNA
Gene id: ENSG00000230426
Gene Name: ERVMER61-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1486-1508
0.032
1
LL22NC03-86G7.1
hsa-miR-182-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24048-24064
0.005
1
7mer
34101-34122
0.002
1
6mer
14188-14208
0.002
1
6mer
22306-22327
0.002
1
6mer
34887-34905
0.002
1
6mer
33778-33800
0.002
1
6mer
30193-30218
0.002
1
6mer
32038-32065
0.002
1
6mer
30943-30960
0.001
1
6mer
35867-35893
0.001
2
6mer
9422-9434
0.001
1
6mer
2751-2775
0.001
2
7mer
26933-26950
0.001
0
6mer
18571-18591
0.001
1
6mer
7241-7265
0.001
0
6mer
21820-21839
0.001
0
6mer
28019-28042
0.001
Not Conserved
6mer
12615-12634
0.001
0
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