LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
CNTFR-AS1
hsa-miR-182-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453642
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-467
0.024
5
6mer
674-692
0.009
5
LINC00525
hsa-miR-182-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412730
Biotype: antisense
Gene id: ENSG00000146666
Gene Name: LINC00525
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
722-739
0.033
1
CTA-941F9.10
hsa-miR-182-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10363-10378
0.011
1
7mer
9482-9507
0.007
Not Conserved
7mer
9804-9830
0.005
3
6mer
776-795
0.003
0
6mer
20481-20489
0.002
1
6mer
12730-12751
0.002
1
6mer
6627-6650
0.002
0
6mer
9601-9615
0.001
1
XIST
hsa-miR-182-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602495
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-85
0.033
3
XLOC_001846
hsa-miR-182-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003098
Biotype: transcript isomorph
Gene id: XLOC_001846
Gene Name: XLOC_001846
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-201
0.033
3
RP11-134N1.2
hsa-miR-182-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538329
Biotype: lincRNA
Gene id: ENSG00000256084
Gene Name: RP11-134N1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
579-598
0.017
1
6mer
510-529
0.016
1
RP1-228P16.3
hsa-miR-182-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546804
Biotype: lincRNA
Gene id: ENSG00000258203
Gene Name: RP1-228P16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-176
0.033
7
XLOC_007279
hsa-miR-182-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3865-3890
0.033
3
XLOC_000738
hsa-miR-182-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000483
Biotype: transcript isomorph
Gene id: XLOC_000738
Gene Name: XLOC_000738
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-123
0.029
0
6mer
189-203
0.004
1
CNTN4-AS1
hsa-miR-182-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442749
Biotype: antisense
Gene id: ENSG00000237990
Gene Name: CNTN4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
645-659
0.033
1
XLOC_014104
hsa-miR-182-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029160
Biotype: transcript isomorph
Gene id: XLOC_014104
Gene Name: XLOC_014104
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-304
0.033
2
CNTFR-AS1
hsa-miR-182-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000438244
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-362
0.024
5
6mer
569-587
0.009
5
PRR7-AS1
hsa-miR-182-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506465
Biotype: antisense
Gene id: ENSG00000246334
Gene Name: PRR7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-134
0.033
0
THTPA
hsa-miR-182-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553985
Biotype: antisense
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-149
0.033
6
XLOC_001288
hsa-miR-182-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001899
Biotype: transcript isomorph
Gene id: XLOC_001288
Gene Name: XLOC_001288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1796-1809
0.016
5
7mer
2087-2108
0.016
2
RP11-616K22.2
hsa-miR-182-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559034
Biotype: lincRNA
Gene id: ENSG00000259499
Gene Name: RP11-616K22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-212
0.029
2
6mer
160-187
0.003
Not Conserved
XLOC_002383
hsa-miR-182-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004488
Biotype: transcript isomorph
Gene id: XLOC_002383
Gene Name: XLOC_002383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
566-591
0.015
4
7mer
630-657
0.009
3
6mer
786-805
0.005
3
6mer
89-101
0.004
2
RP11-762I7.4
hsa-miR-182-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547009
Biotype: sense_intronic
Gene id: ENSG00000257509
Gene Name: RP11-762I7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-328
0.032
1
RP11-22D3.2
hsa-miR-182-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564222
Biotype: lincRNA
Gene id: ENSG00000261815
Gene Name: RP11-22D3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1128-1140
0.019
3
7mer
203-223
0.013
0
LINC01360
hsa-miR-182-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452553
Biotype: lincRNA
Gene id: ENSG00000233973
Gene Name: LINC01360
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-437
0.032
0
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