LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
XLOC_013931
hsa-miR-182-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
933-950
0.027
0
6mer
1198-1222
0.006
0
XLOC_002735
hsa-miR-182-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006134
Biotype: transcript isomorph
Gene id: XLOC_002735
Gene Name: XLOC_002735
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
148-166
0.034
0
XLOC_002698
hsa-miR-182-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006087
Biotype: transcript isomorph
Gene id: XLOC_002698
Gene Name: XLOC_002698
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-103
0.029
4
6mer
272-290
0.004
1
RP11-181C3.1
hsa-miR-182-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501499
Biotype: lincRNA
Gene id: ENSG00000245017
Gene Name: RP11-181C3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
586-612
0.025
8
6mer
441-467
0.009
5
RP11-311F12.1
hsa-miR-182-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577087
Biotype: lincRNA
Gene id: ENSG00000262681
Gene Name: RP11-311F12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3183-3196
0.024
0
6mer
88-108
0.004
1
6mer
2485-2493
0.003
1
6mer
1860-1873
0.002
1
LINC01085
hsa-miR-182-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506739
Biotype: lincRNA
Gene id: ENSG00000248698
Gene Name: LINC01085
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-802
0.028
1
6mer
711-737
0.005
3
LINC00856
hsa-miR-182-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000624665
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-265
0.024
9
7mer
324-344
0.010
1
XLOC_004192
hsa-miR-182-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1083-1098
0.026
5
6mer
3468-3472
0.004
2
6mer
1862-1879
0.004
9
RP11-752G15.3
hsa-miR-182-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000618020
Biotype: antisense
Gene id: ENSG00000259462
Gene Name: RP11-752G15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-38
0.026
1
7mer
739-761
0.007
2
CTA-929C8.6
hsa-miR-182-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426467
Biotype: lincRNA
Gene id: ENSG00000226741
Gene Name: CTA-929C8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2824-2841
0.028
7
6mer
2402-2414
0.003
6
6mer
3827-3849
0.002
0
RP11-255H23.4
hsa-miR-182-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599944
Biotype: lincRNA
Gene id: ENSG00000267924
Gene Name: RP11-255H23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-567
0.028
0
6mer
1725-1743
0.003
0
6mer
1599-1620
0.002
0
XLOC_005753
hsa-miR-182-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012196
Biotype: transcript isomorph
Gene id: XLOC_005753
Gene Name: XLOC_005753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1541-1562
0.024
1
7mer
1791-1807
0.008
3
6mer
2662-2685
0.002
1
FLJ33581
hsa-miR-182-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457274
Biotype: lincRNA
Gene id: ENSG00000230133
Gene Name: FLJ33581
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2346-2367
0.029
0
6mer
2118-2141
0.004
0
RP11-989E6.10
hsa-miR-182-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568752
Biotype: lincRNA
Gene id: ENSG00000261200
Gene Name: RP11-989E6.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
455-478
0.030
0
6mer
3033-3051
0.003
0
XLOC_005219
hsa-miR-182-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011166
Biotype: transcript isomorph
Gene id: XLOC_005219
Gene Name: XLOC_005219
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2908-2932
0.027
2
7mer
1207-1227
0.004
0
6mer
1038-1059
0.002
0
XLOC_005615
hsa-miR-182-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012086
Biotype: transcript isomorph
Gene id: XLOC_005615
Gene Name: XLOC_005615
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
249-267
0.033
0
RP11-433A10.2
hsa-miR-182-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491567
Biotype: lincRNA
Gene id: ENSG00000242618
Gene Name: RP11-433A10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-83
0.033
0
GRK5-IT1
hsa-miR-182-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421206
Biotype: sense_intronic
Gene id: ENSG00000228485
Gene Name: GRK5-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
309-325
0.033
0
SNHG14
hsa-miR-182-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2537-2553
0.014
1
7mer
5855-5874
0.009
4
7mer
5414-5429
0.006
3
7mer
5889-5905
0.004
5
RP11-513O17.2
hsa-miR-182-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523341
Biotype: lincRNA
Gene id: ENSG00000253301
Gene Name: RP11-513O17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-443
0.026
Not Conserved
6mer
16-37
0.004
Not Conserved
6mer
321-331
0.003
Not Conserved
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