LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004135
hsa-miR-182-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009152
Biotype: transcript isomorph
Gene id: XLOC_004135
Gene Name: XLOC_004135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-116
0.029
0
6mer
500-513
0.006
4
XLOC_009300
hsa-miR-182-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019499
Biotype: transcript isomorph
Gene id: XLOC_009300
Gene Name: XLOC_009300
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-104
0.035
5
LINC00486
hsa-miR-182-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435075
Biotype: lincRNA
Gene id: ENSG00000230876
Gene Name: LINC00486
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
996-1018
0.020
1
7mer
534-544
0.015
2
RP11-27K13.3
hsa-miR-182-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445523
Biotype: antisense
Gene id: ENSG00000236137
Gene Name: RP11-27K13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
624-637
0.020
4
7mer
1586-1611
0.015
1
RP11-92F20.1
hsa-miR-182-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620050
Biotype: antisense
Gene id: ENSG00000274629
Gene Name: RP11-92F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
540-553
0.035
10
XLOC_010117
hsa-miR-182-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021344
Biotype: transcript isomorph
Gene id: XLOC_010117
Gene Name: XLOC_010117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-363
0.035
0
GAS5
hsa-miR-182-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431268
Biotype: retained_intron
Gene id: ENSG00000234741
Gene Name: GAS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-358
0.035
10
SNHG10
hsa-miR-182-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554169
Biotype: antisense
Gene id: ENSG00000247092
Gene Name: SNHG10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-224
0.035
1
LINC01004
hsa-miR-182-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7849-7866
0.014
5
7mer
5904-5929
0.010
3
6mer
8787-8801
0.004
1
7mer
7453-7473
0.004
0
7mer
7391-7406
0.002
1
6mer
4353-4373
0.002
3
CTD-2337I7.1
hsa-miR-182-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526091
Biotype: lincRNA
Gene id: ENSG00000255345
Gene Name: CTD-2337I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1618-1638
0.025
6
6mer
731-740
0.007
7
6mer
474-498
0.003
1
XLOC_007102
hsa-miR-182-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015025
Biotype: transcript isomorph
Gene id: XLOC_007102
Gene Name: XLOC_007102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
709-735
0.035
1
EFCAB14-AS1
hsa-miR-182-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418985
Biotype: antisense
Gene id: ENSG00000228237
Gene Name: EFCAB14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-317
0.035
5
RP11-276H19.2
hsa-miR-182-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602579
Biotype: lincRNA
Gene id: ENSG00000269994
Gene Name: RP11-276H19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-394
0.035
1
CTD-2545M3.2
hsa-miR-182-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598194
Biotype: antisense
Gene id: ENSG00000268854
Gene Name: CTD-2545M3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-229
0.035
3
RP11-303E16.5
hsa-miR-182-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562450
Biotype: antisense
Gene id: ENSG00000261141
Gene Name: RP11-303E16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-462
0.035
2
DKFZp434J0226
hsa-miR-182-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596066
Biotype: retained_intron
Gene id: ENSG00000268460
Gene Name: DKFZp434J0226
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3149-3159
0.026
0
7mer
1116-1141
0.008
0
RP11-121G22.3
hsa-miR-182-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549161
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-735
0.030
5
6mer
650-660
0.005
2
LINC01443
hsa-miR-182-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580967
Biotype: lincRNA
Gene id: ENSG00000266554
Gene Name: LINC01443
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
315-336
0.030
Not Conserved
6mer
169-194
0.003
0
6mer
483-508
0.002
Not Conserved
RP11-265N7.1
hsa-miR-182-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560743
Biotype: lincRNA
Gene id: ENSG00000259450
Gene Name: RP11-265N7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
723-750
0.035
9
RNASEH1-AS1
hsa-miR-182-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438436
Biotype: antisense
Gene id: ENSG00000234171
Gene Name: RNASEH1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1178-1196
0.034
1
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