LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-58B2.1
hsa-miR-182-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502494
Biotype: antisense
Gene id: ENSG00000249017
Gene Name: RP11-58B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-107
0.037
0
RP11-507K2.3
hsa-miR-182-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556328
Biotype: antisense
Gene id: ENSG00000258789
Gene Name: RP11-507K2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
534-552
0.037
2
AC003102.3
hsa-miR-182-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586388
Biotype: antisense
Gene id: ENSG00000267750
Gene Name: AC003102.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
562-589
0.034
0
6mer
695-710
0.003
Not Conserved
PWRN4
hsa-miR-182-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563016
Biotype: lincRNA
Gene id: ENSG00000260232
Gene Name: PWRN4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-150
0.037
0
RUSC1-AS1
hsa-miR-182-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446880
Biotype: antisense
Gene id: ENSG00000225855
Gene Name: RUSC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-448
0.032
2
6mer
1314-1336
0.005
3
RP11-161M6.2
hsa-miR-182-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562570
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-50
0.019
2
8mer
2002-2022
0.013
0
6mer
304-330
0.005
2
AC027119.1
hsa-miR-182-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000425894
Biotype: lincRNA
Gene id: ENSG00000229642
Gene Name: AC027119.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-53
0.036
1
RNASEH1-AS1
hsa-miR-182-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426725
Biotype: antisense
Gene id: ENSG00000234171
Gene Name: RNASEH1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
810-828
0.036
1
LARGE-AS1
hsa-miR-182-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000438159
Biotype: antisense
Gene id: ENSG00000224973
Gene Name: LARGE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2279-2293
0.026
0
7mer
1670-1680
0.011
5
XLOC_010445
hsa-miR-182-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021851
Biotype: transcript isomorph
Gene id: XLOC_010445
Gene Name: XLOC_010445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4671-4686
0.022
1
7mer
2903-2925
0.007
3
8mer
4738-4760
0.005
2
6mer
5050-5072
0.002
1
TMEM254-AS1
hsa-miR-182-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432070
Biotype: antisense
Gene id: ENSG00000230091
Gene Name: TMEM254-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-363
0.019
0
7mer
1566-1593
0.007
Not Conserved
6mer
2050-2063
0.006
3
7mer
1371-1395
0.005
0
RP11-33A14.1
hsa-miR-182-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000411727
Biotype: lincRNA
Gene id: ENSG00000223930
Gene Name: RP11-33A14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1863-1890
0.031
1
6mer
438-463
0.005
1
RP11-171N4.2
hsa-miR-182-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504237
Biotype: lincRNA
Gene id: ENSG00000251283
Gene Name: RP11-171N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-73
0.028
0
6mer
388-401
0.008
4
HNF4A-AS1
hsa-miR-182-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000609152
Biotype: antisense
Gene id: ENSG00000229005
Gene Name: HNF4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-135
0.036
0
RP11-91P17.1
hsa-miR-182-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520603
Biotype: lincRNA
Gene id: ENSG00000254001
Gene Name: RP11-91P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-114
0.025
1
6mer
353-378
0.011
3
LINC01021
hsa-miR-182-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505775
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
747-772
0.036
9
RP11-719J20.1
hsa-miR-182-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430821
Biotype: lincRNA
Gene id: ENSG00000226707
Gene Name: RP11-719J20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
57-70
0.036
0
LOC100506730
hsa-miR-182-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037847.1
Biotype: lincRNA
Gene id: NR_037847.1 (gene)
Gene Name: LOC100506730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2136-2162
0.036
0
RP11-3G20.1
hsa-miR-182-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518922
Biotype: lincRNA
Gene id: ENSG00000254209
Gene Name: RP11-3G20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-171
0.036
3
RPS10P7
hsa-miR-182-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441932
Biotype: lincRNA
Gene id: ENSG00000223396
Gene Name: RPS10P7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
811-825
0.033
0
6mer
1737-1759
0.003
1
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