LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
XLOC_007214
hsa-miR-182-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015168
Biotype: transcript isomorph
Gene id: XLOC_007214
Gene Name: XLOC_007214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-195
0.029
7
7mer
630-654
0.009
1
AF067845.1
hsa-miR-182-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000567210
Biotype: lincRNA
Gene id: ENSG00000260721
Gene Name: AF067845.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-65
0.033
1
6mer
910-931
0.005
1
XLOC_007638
hsa-miR-182-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016264
Biotype: transcript isomorph
Gene id: XLOC_007638
Gene Name: XLOC_007638
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-256
0.038
1
SMC2-AS1
hsa-miR-182-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603949
Biotype: lincRNA
Gene id: ENSG00000270332
Gene Name: SMC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-85
0.038
3
LINC01470
hsa-miR-182-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522300
Biotype: lincRNA
Gene id: ENSG00000249484
Gene Name: LINC01470
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1585-1606
0.019
0
8mer
1489-1516
0.017
2
6mer
1518-1532
0.002
0
AC011290.4
hsa-miR-182-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439751
Biotype: antisense
Gene id: ENSG00000227172
Gene Name: AC011290.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-175
0.038
2
RP11-375O18.2
hsa-miR-182-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000413352
Biotype: lincRNA
Gene id: ENSG00000233086
Gene Name: RP11-375O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1495-1513
0.015
0
7mer
989-1006
0.012
1
6mer
1609-1628
0.006
3
6mer
1636-1651
0.006
3
RP11-417F21.1
hsa-miR-182-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000506009
Biotype: antisense
Gene id: ENSG00000250116
Gene Name: RP11-417F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
440-462
0.038
Not Conserved
XLOC_010126
hsa-miR-182-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020839
Biotype: transcript isomorph
Gene id: XLOC_010126
Gene Name: XLOC_010126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-336
0.038
1
LINC00312
hsa-miR-182-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442796
Biotype: lincRNA
Gene id: ENSG00000237697
Gene Name: LINC00312
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
737-752
0.032
3
6mer
1790-1803
0.006
2
XLOC_001223
hsa-miR-182-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001838
Biotype: transcript isomorph
Gene id: XLOC_001223
Gene Name: XLOC_001223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-464
0.038
1
AC004623.2
hsa-miR-182-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587059
Biotype: antisense
Gene id: ENSG00000267755
Gene Name: AC004623.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-45
0.038
1
AC004623.2
hsa-miR-182-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589673
Biotype: antisense
Gene id: ENSG00000267755
Gene Name: AC004623.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-45
0.038
1
EEF1E1-BLOC1S5
hsa-miR-182-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037618.1
Biotype: sense
Gene id: NR_037618.1 (gene)
Gene Name: EEF1E1-BLOC1S5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-167
0.029
2
6mer
373-386
0.009
8
EFCAB14-AS1
hsa-miR-182-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442839
Biotype: antisense
Gene id: ENSG00000228237
Gene Name: EFCAB14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-325
0.038
5
RP11-526P6.1
hsa-miR-182-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544251
Biotype: lincRNA
Gene id: ENSG00000256022
Gene Name: RP11-526P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
409-427
0.037
1
AC007038.7
hsa-miR-182-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110291.1
Biotype: antisense
Gene id: NR_110291.1 (gene)
Gene Name: AC007038.7
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
861-871
0.020
2
7mer
154-171
0.018
3
RP11-344E13.4
hsa-miR-182-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578888
Biotype: antisense
Gene id: ENSG00000266369
Gene Name: RP11-344E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1166-1188
0.030
0
6mer
396-409
0.004
0
6mer
957-969
0.004
Not Conserved
RP11-210M15.2
hsa-miR-182-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559008
Biotype: lincRNA
Gene id: ENSG00000259495
Gene Name: RP11-210M15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6518-6543
0.022
4
7mer
2260-2285
0.004
3
7mer
4319-4340
0.004
0
6mer
779-799
0.004
1
6mer
3189-3202
0.002
1
6mer
4854-4866
0.001
0
RP11-744J10.3
hsa-miR-182-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519557
Biotype: lincRNA
Gene id: ENSG00000253479
Gene Name: RP11-744J10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-166
0.037
1
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