LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
LINC00562
hsa-miR-182-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000566385
Biotype: lincRNA
Gene id: ENSG00000260388
Gene Name: LINC00562
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2212-2238
0.022
2
7mer
2145-2170
0.019
0
RP11-373D23.2
hsa-miR-182-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604052
Biotype: sense_intronic
Gene id: ENSG00000270640
Gene Name: RP11-373D23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-50
0.040
8
AC104777.2
hsa-miR-182-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441356
Biotype: lincRNA
Gene id: ENSG00000236049
Gene Name: AC104777.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2272-2297
0.029
5
7mer
2243-2252
0.007
0
6mer
1389-1398
0.004
4
ERVH48-1
hsa-miR-182-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
917-934
0.027
0
6mer
1026-1045
0.008
0
6mer
2467-2481
0.003
Not Conserved
6mer
1792-1802
0.002
Not Conserved
XLOC_004188
hsa-miR-182-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008670
Biotype: transcript isomorph
Gene id: XLOC_004188
Gene Name: XLOC_004188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
643-660
0.040
8
LOC102467080
hsa-miR-182-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104659.1
Biotype: lincRNA
Gene id: NR_104659.1 (gene)
Gene Name: LOC102467080
UCSC graphic: -
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-147
0.026
1
6mer
60-86
0.006
2
6mer
429-448
0.004
2
6mer
526-546
0.004
1
RP4-777O23.1
hsa-miR-182-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000579437
Biotype: lincRNA
Gene id: ENSG00000263683
Gene Name: RP4-777O23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
385-397
0.040
3
RP11-380B4.3
hsa-miR-182-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1112-1131
0.027
0
7mer
5072-5088
0.013
1
XLOC_012912
hsa-miR-182-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026864
Biotype: transcript isomorph
Gene id: XLOC_012912
Gene Name: XLOC_012912
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-50
0.025
1
7mer
43-69
0.012
1
6mer
98-122
0.004
1
DARS-AS1
hsa-miR-182-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601586
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-618
0.040
4
RP11-248G5.9
hsa-miR-182-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613982
Biotype: antisense
Gene id: ENSG00000273523
Gene Name: RP11-248G5.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
518-542
0.035
0
6mer
2704-2731
0.004
2
6mer
579-602
0.001
0
WDR11-AS1
hsa-miR-182-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456120
Biotype: antisense
Gene id: ENSG00000227165
Gene Name: WDR11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-213
0.040
3
LOC101929657
hsa-miR-182-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_110306.1
Biotype: antisense
Gene id: NR_110306.1 (gene)
Gene Name: LOC101929657
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
514-538
0.035
0
6mer
2700-2727
0.004
2
6mer
575-598
0.001
0
SIK3-IT1
hsa-miR-182-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000454832
Biotype: sense_intronic
Gene id: ENSG00000231865
Gene Name: SIK3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-440
0.022
4
8mer
2038-2056
0.018
1
XX-C2158C6.3
hsa-miR-182-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415530
Biotype: lincRNA
Gene id: ENSG00000225532
Gene Name: XX-C2158C6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
146-162
0.010
1
6mer
82-106
0.010
1
6mer
179-198
0.008
1
6mer
307-325
0.006
0
6mer
257-269
0.005
0
XLOC_004822
hsa-miR-182-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010334
Biotype: transcript isomorph
Gene id: XLOC_004822
Gene Name: XLOC_004822
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-146
0.026
1
6mer
59-85
0.006
2
6mer
428-447
0.004
2
6mer
525-545
0.004
1
AC093802.1
hsa-miR-182-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000407524
Biotype: lincRNA
Gene id: ENSG00000220256
Gene Name: AC093802.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-278
0.039
2
6mer
1645-1663
0.001
Not Conserved
RP11-78L16.1
hsa-miR-182-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616578
Biotype: lincRNA
Gene id: ENSG00000278630
Gene Name: RP11-78L16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-330
0.040
6
RP11-493E12.2
hsa-miR-182-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609422
Biotype: sense_intronic
Gene id: ENSG00000273302
Gene Name: RP11-493E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
720-745
0.040
0
RP11-370K11.1
hsa-miR-182-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453572
Biotype: sense_intronic
Gene id: ENSG00000232184
Gene Name: RP11-370K11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
145-156
0.031
1
6mer
335-360
0.005
2
6mer
213-228
0.004
1
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