LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
LINC01330
hsa-miR-182-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481578
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-633
0.024
7
7mer
1769-1787
0.012
0
7mer
790-816
0.007
2
RP11-778J16.3
hsa-miR-182-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549532
Biotype: lincRNA
Gene id: ENSG00000257400
Gene Name: RP11-778J16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-235
0.043
1
RP3-399L15.3
hsa-miR-182-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431399
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-391
0.030
1
7mer
241-266
0.013
1
MROH7-TTC4
hsa-miR-182-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037640.1
Biotype: sense
Gene id: NR_037640.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5771-5793
0.020
0
8mer
3808-3820
0.016
5
7mer
4552-4579
0.006
5
6mer
5037-5059
0.001
1
KB-1615E4.2
hsa-miR-182-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521851
Biotype: antisense
Gene id: ENSG00000253666
Gene Name: KB-1615E4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
322-342
0.043
1
GS1-519E5.1
hsa-miR-182-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000432442
Biotype: lincRNA
Gene id: ENSG00000228543
Gene Name: GS1-519E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1112-1135
0.033
4
6mer
1503-1529
0.007
4
6mer
969-990
0.003
0
XLOC_003595
hsa-miR-182-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008143
Biotype: transcript isomorph
Gene id: XLOC_003595
Gene Name: XLOC_003595
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-104
0.043
1
RP11-380G5.2
hsa-miR-182-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416679
Biotype: sense_intronic
Gene id: ENSG00000224745
Gene Name: RP11-380G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-389
0.038
2
6mer
12-36
0.005
2
AC022007.5
hsa-miR-182-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420091
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-39
0.043
0
RP11-95M5.1
hsa-miR-182-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566553
Biotype: lincRNA
Gene id: ENSG00000260902
Gene Name: RP11-95M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-438
0.031
Not Conserved
7mer
63-86
0.009
0
6mer
3524-3545
0.003
1
CTD-2171N6.1
hsa-miR-182-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589125
Biotype: lincRNA
Gene id: ENSG00000267013
Gene Name: CTD-2171N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2170-2193
0.020
5
7mer
2593-2617
0.020
3
6mer
1236-1246
0.002
0
6mer
1212-1230
0.001
0
XLOC_011649
hsa-miR-182-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024333
Biotype: transcript isomorph
Gene id: XLOC_011649
Gene Name: XLOC_011649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-176
0.043
1
AL035610.1
hsa-miR-182-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609782
Biotype: retained_intron
Gene id: ENSG00000232079
Gene Name: AL035610.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-514
0.043
1
LINC00648
hsa-miR-182-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555985
Biotype: lincRNA
Gene id: ENSG00000259129
Gene Name: LINC00648
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
887-896
0.019
Not Conserved
7mer
325-349
0.012
2
9mer
1379-1403
0.012
1
RP4-639F20.1
hsa-miR-182-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438509
Biotype: antisense
Gene id: ENSG00000235501
Gene Name: RP4-639F20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-276
0.039
1
6mer
317-344
0.004
1
FOXN3-AS2
hsa-miR-182-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554071
Biotype: antisense
Gene id: ENSG00000259073
Gene Name: FOXN3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-61
0.042
7
XLOC_002099
hsa-miR-182-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003286
Biotype: transcript isomorph
Gene id: XLOC_002099
Gene Name: XLOC_002099
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1900-1927
0.035
3
6mer
683-697
0.004
3
6mer
1415-1441
0.004
2
WDR11-AS1
hsa-miR-182-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598981
Biotype: antisense
Gene id: ENSG00000227165
Gene Name: WDR11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-213
0.042
3
RP11-423P10.2
hsa-miR-182-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606229
Biotype: sense_intronic
Gene id: ENSG00000272054
Gene Name: RP11-423P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-347
0.020
1
7mer
150-175
0.018
1
6mer
595-616
0.004
1
LINC01515
hsa-miR-182-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601888
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
256-283
0.042
Not Conserved
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