LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
LNX1-AS1
hsa-miR-182-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511989
Biotype: antisense
Gene id: ENSG00000250930
Gene Name: LNX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-295
0.045
3
XLOC_005951
hsa-miR-182-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011629
Biotype: transcript isomorph
Gene id: XLOC_005951
Gene Name: XLOC_005951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
146-162
0.010
1
6mer
82-106
0.010
1
6mer
179-198
0.009
1
6mer
367-385
0.006
0
6mer
308-326
0.005
0
6mer
257-275
0.005
0
NPTN-IT1
hsa-miR-182-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_103844.1
Biotype: sense
Gene id: NR_103844.1 (gene)
Gene Name: NPTN-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-382
0.039
0
7mer
1472-1484
0.006
1
RP11-495P10.8
hsa-miR-182-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-163
0.045
0
LINC01330
hsa-miR-182-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496891
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-64
0.032
7
7mer
375-401
0.013
2
GAS5
hsa-miR-182-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454813
Biotype: retained_intron
Gene id: ENSG00000234741
Gene Name: GAS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-357
0.044
10
RP11-208N20.1
hsa-miR-182-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508388
Biotype: lincRNA
Gene id: ENSG00000250141
Gene Name: RP11-208N20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-38
0.044
1
ITGA9-AS1
hsa-miR-182-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594579
Biotype: antisense
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-83
0.044
1
RP11-461F16.3
hsa-miR-182-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552426
Biotype: antisense
Gene id: ENSG00000257910
Gene Name: RP11-461F16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
372-390
0.044
2
LINC00035
hsa-miR-182-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026690.1
Biotype: lincRNA
Gene id: NR_026690.1 (gene)
Gene Name: LINC00035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-281
0.044
5
FLJ39080
hsa-miR-182-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523118
Biotype: lincRNA
Gene id: ENSG00000254349
Gene Name: FLJ39080
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1376-1393
0.032
3
7mer
1030-1052
0.012
3
RP11-50D9.3
hsa-miR-182-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000565254
Biotype: antisense
Gene id: ENSG00000261668
Gene Name: RP11-50D9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
632-657
0.024
3
7mer
93-109
0.020
1
XIST
hsa-miR-182-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15912-15932
0.012
0
7mer
7470-7484
0.011
3
7mer
8743-8768
0.006
1
6mer
725-734
0.004
2
6mer
8192-8196
0.003
1
6mer
3790-3800
0.002
1
6mer
5320-5332
0.002
3
6mer
3557-3578
0.002
2
6mer
1827-1850
0.002
0
6mer
8629-8652
0.001
1
AC008060.7
hsa-miR-182-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000401499
Biotype: lincRNA
Gene id: ENSG00000218672
Gene Name: AC008060.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-257
0.044
0
LOC648987
hsa-miR-182-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1948-1973
0.029
1
6mer
614-628
0.007
1
6mer
2080-2095
0.007
1
RP11-147C23.1
hsa-miR-182-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623085
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-43
0.025
2
7mer
363-376
0.019
4
MROH7-TTC4
hsa-miR-182-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037639.1
Biotype: sense
Gene id: NR_037639.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5904-5926
0.021
0
8mer
4004-4016
0.016
5
7mer
4685-4712
0.006
5
6mer
5170-5192
0.001
1
RP1-81P11.1
hsa-miR-182-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552060
Biotype: lincRNA
Gene id: ENSG00000257677
Gene Name: RP1-81P11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2-19
0.044
1
XLOC_002878
hsa-miR-182-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006278
Biotype: transcript isomorph
Gene id: XLOC_002878
Gene Name: XLOC_002878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2679-2694
0.037
1
8mer
982-1000
0.007
0
RP11-43N5.1
hsa-miR-182-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542219
Biotype: lincRNA
Gene id: ENSG00000255970
Gene Name: RP11-43N5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
237-263
0.044
1
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