LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
AC009299.2
hsa-miR-182-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421122
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
722-739
0.028
8
7mer
8-16
0.018
1
RP11-530C5.4
hsa-miR-182-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619055
Biotype: sense_intronic
Gene id: ENSG00000277130
Gene Name: RP11-530C5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-15
0.046
0
CTD-2201E18.3
hsa-miR-182-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000314957
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1659-1684
0.038
1
6mer
1791-1806
0.008
1
RP11-476D10.1
hsa-miR-182-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000563933
Biotype: lincRNA
Gene id: ENSG00000260943
Gene Name: RP11-476D10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
381-402
0.046
0
XLOC_012704
hsa-miR-182-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026351
Biotype: transcript isomorph
Gene id: XLOC_012704
Gene Name: XLOC_012704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-34
0.018
1
7mer
1832-1857
0.013
3
6mer
1965-1982
0.008
7
6mer
385-410
0.005
0
6mer
2017-2033
0.003
1
XLOC_004271
hsa-miR-182-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010613
Biotype: transcript isomorph
Gene id: XLOC_004271
Gene Name: XLOC_004271
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2761-2772
0.023
1
8mer
808-825
0.022
1
LOC150935
hsa-miR-182-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037808.1
Biotype: lincRNA
Gene id: NR_037808.1 (gene)
Gene Name: LOC150935
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-278
0.045
2
XLOC_007089
hsa-miR-182-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4105-4121
0.009
0
7mer
10346-10361
0.005
0
7mer
10378-10394
0.005
Not Conserved
6mer
9865-9883
0.003
0
7mer
6758-6770
0.003
0
6mer
6792-6808
0.003
0
7mer
5699-5725
0.003
Not Conserved
6mer
2645-2659
0.003
0
7mer
9091-9103
0.003
Not Conserved
7mer
4612-4626
0.002
Not Conserved
7mer
10173-10185
0.002
Not Conserved
6mer
3932-3942
0.002
0
6mer
7921-7939
0.002
Not Conserved
6mer
5931-5947
0.001
Not Conserved
6mer
6190-6197
0.001
Not Conserved
6mer
4876-4898
0.001
Not Conserved
BCDIN3D-AS1
hsa-miR-182-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027501.1
Biotype: antisense
Gene id: NR_027501.1 (gene)
Gene Name: BCDIN3D-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-431
0.043
8
6mer
1197-1212
0.002
2
BCDIN3D-AS1
hsa-miR-182-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027499.1
Biotype: antisense
Gene id: NR_027499.1 (gene)
Gene Name: BCDIN3D-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-435
0.043
8
6mer
1201-1216
0.002
2
RP11-472N13.3
hsa-miR-182-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433770
Biotype: lincRNA
Gene id: ENSG00000237797
Gene Name: RP11-472N13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-144
0.045
1
BCDIN3D-AS1
hsa-miR-182-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548872
Biotype: antisense
Gene id: ENSG00000258057
Gene Name: BCDIN3D-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-436
0.043
8
6mer
1202-1217
0.002
2
RP4-555D20.2
hsa-miR-182-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568686
Biotype: lincRNA
Gene id: ENSG00000261786
Gene Name: RP4-555D20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4763-4790
0.023
3
7mer
4191-4205
0.016
3
6mer
4315-4332
0.003
4
6mer
2082-2102
0.002
3
6mer
3543-3563
0.001
2
XLOC_004536
hsa-miR-182-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010079
Biotype: transcript isomorph
Gene id: XLOC_004536
Gene Name: XLOC_004536
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2245-2265
0.045
4
RP13-143G15.4
hsa-miR-182-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585946
Biotype: antisense
Gene id: ENSG00000237596
Gene Name: RP13-143G15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-333
0.040
4
6mer
125-151
0.005
1
CTD-2044J15.2
hsa-miR-182-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606434
Biotype: lincRNA
Gene id: ENSG00000272520
Gene Name: CTD-2044J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2539-2559
0.042
0
6mer
2208-2218
0.003
1
THTPA
hsa-miR-182-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554403
Biotype: retained_intron
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
959-979
0.026
6
7mer
764-790
0.007
4
7mer
122-147
0.006
3
6mer
555-582
0.006
4
THTPA
hsa-miR-182-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556613
Biotype: retained_intron
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-312
0.037
6
6mer
97-117
0.008
9
RP11-171I2.5
hsa-miR-182-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604215
Biotype: antisense
Gene id: ENSG00000271011
Gene Name: RP11-171I2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-156
0.028
10
7mer
302-318
0.017
7
CELF2-AS1
hsa-miR-182-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000379256
Biotype: antisense
Gene id: ENSG00000181800
Gene Name: CELF2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1868-1883
0.041
1
6mer
447-461
0.004
1
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