LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-161M6.2
hsa-miR-182-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563863
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1509-1529
0.027
0
7mer
30-47
0.020
2
6mer
301-327
0.005
2
RP11-121G22.3
hsa-miR-182-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550302
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-333
0.046
5
6mer
248-258
0.006
2
RP11-465N4.5
hsa-miR-182-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608886
Biotype: antisense
Gene id: ENSG00000273478
Gene Name: RP11-465N4.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-544
0.052
3
RP11-94L15.2
hsa-miR-182-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5800-5810
0.032
5
8mer
430-442
0.020
4
LOC100240734
hsa-miR-182-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_026657.1
Biotype: lincRNA
Gene id: NR_026657.1 (gene)
Gene Name: LOC100240734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-425
0.052
2
RP11-121G22.3
hsa-miR-182-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553197
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-552
0.046
5
6mer
467-477
0.005
2
RP11-778H2.1
hsa-miR-182-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540733
Biotype: lincRNA
Gene id: ENSG00000256120
Gene Name: RP11-778H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-238
0.052
1
XLOC_014197
hsa-miR-182-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029335
Biotype: transcript isomorph
Gene id: XLOC_014197
Gene Name: XLOC_014197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3044-3061
0.030
7
7mer
162-187
0.011
4
6mer
115-119
0.005
0
6mer
2622-2634
0.003
6
6mer
4047-4069
0.002
0
GRM7-AS3
hsa-miR-182-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000449158
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2-26
0.047
1
6mer
212-232
0.005
1
RP4-665J23.1
hsa-miR-182-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606660
Biotype: retained_intron
Gene id: ENSG00000233593
Gene Name: RP4-665J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
48-55
0.051
1
RP11-586K2.1
hsa-miR-182-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520849
Biotype: antisense
Gene id: ENSG00000253553
Gene Name: RP11-586K2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-260
0.051
2
TEX41
hsa-miR-182-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604253
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-471
0.051
7
RP11-627G23.1
hsa-miR-182-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3956-3980
0.043
2
6mer
1065-1078
0.003
3
6mer
309-333
0.003
0
6mer
3197-3224
0.001
0
XLOC_006712
hsa-miR-182-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014617
Biotype: transcript isomorph
Gene id: XLOC_006712
Gene Name: XLOC_006712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
826-844
0.039
5
7mer
14-35
0.005
Not Conserved
6mer
260-273
0.004
1
6mer
1918-1938
0.004
1
C10orf32-ASMT
hsa-miR-182-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_037644.1
Biotype: sense
Gene id: NR_037644.1 (gene)
Gene Name: C10orf32-ASMT
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2616-2635
0.044
2
7mer
1377-1392
0.004
2
6mer
1091-1105
0.004
7
RP11-932O9.9
hsa-miR-182-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602594
Biotype: lincRNA
Gene id: ENSG00000269930
Gene Name: RP11-932O9.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
628-649
0.051
1
RP11-121G22.3
hsa-miR-182-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550938
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-446
0.045
5
6mer
361-371
0.006
2
RP11-168K9.2
hsa-miR-182-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527317
Biotype: lincRNA
Gene id: ENSG00000255087
Gene Name: RP11-168K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
684-695
0.032
0
7mer
321-343
0.016
3
6mer
1287-1306
0.003
3
AP001628.7
hsa-miR-182-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420273
Biotype: lincRNA
Gene id: ENSG00000233754
Gene Name: AP001628.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-591
0.051
1
TEX41
hsa-miR-182-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605238
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-477
0.051
7
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