LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
TEX41
hsa-miR-182-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602041
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-627
0.053
7
RP11-658F2.8
hsa-miR-182-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000550837
Biotype: antisense
Gene id: ENSG00000258297
Gene Name: RP11-658F2.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-142
0.032
2
6mer
247-272
0.011
8
6mer
277-294
0.010
8
XLOC_007507
hsa-miR-182-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016121
Biotype: transcript isomorph
Gene id: XLOC_007507
Gene Name: XLOC_007507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
710-729
0.053
5
RP11-380D23.1
hsa-miR-182-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503998
Biotype: antisense
Gene id: ENSG00000250511
Gene Name: RP11-380D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-559
0.041
3
7mer
637-660
0.012
2
RP11-15H20.6
hsa-miR-182-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596561
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
245-271
0.053
1
RP4-671O14.7
hsa-miR-182-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17625-17642
0.016
2
8mer
10264-10281
0.011
0
7mer
16854-16867
0.010
4
8mer
5886-5902
0.003
Not Conserved
7mer
3713-3734
0.003
0
6mer
13844-13870
0.002
4
6mer
18137-18161
0.002
0
6mer
13654-13669
0.002
2
6mer
5189-5211
0.002
Not Conserved
6mer
11368-11383
0.001
Not Conserved
6mer
10950-10968
0.001
0
XLOC_013910
hsa-miR-182-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028992
Biotype: transcript isomorph
Gene id: XLOC_013910
Gene Name: XLOC_013910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-341
0.053
4
RP11-439C15.4
hsa-miR-182-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517676
Biotype: lincRNA
Gene id: ENSG00000253764
Gene Name: RP11-439C15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
304-325
0.053
0
LINC00890
hsa-miR-182-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569275
Biotype: lincRNA
Gene id: ENSG00000260802
Gene Name: LINC00890
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4261-4277
0.030
9
7mer
2371-2387
0.012
8
6mer
287-306
0.005
1
6mer
3985-4008
0.004
1
6mer
3130-3146
0.001
1
RP11-363G2.4
hsa-miR-182-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1656-1672
0.030
0
7mer
1387-1405
0.023
0
XLOC_008046
hsa-miR-182-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016921
Biotype: transcript isomorph
Gene id: XLOC_008046
Gene Name: XLOC_008046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4261-4277
0.030
9
7mer
2371-2387
0.012
8
6mer
287-306
0.005
1
6mer
3985-4008
0.004
1
6mer
3130-3146
0.001
1
LINC00114
hsa-miR-182-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411989
Biotype: lincRNA
Gene id: ENSG00000223806
Gene Name: LINC00114
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1668-1690
0.045
1
6mer
1394-1412
0.005
2
6mer
816-838
0.002
0
TTN-AS1
hsa-miR-182-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000586707
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
679-704
0.052
12
XLOC_007257
hsa-miR-182-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015198
Biotype: transcript isomorph
Gene id: XLOC_007257
Gene Name: XLOC_007257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-139
0.052
1
RP11-147C23.1
hsa-miR-182-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595188
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
585-598
0.028
4
7mer
74-101
0.024
2
CTB-91J4.1
hsa-miR-182-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613949
Biotype: antisense
Gene id: ENSG00000276241
Gene Name: CTB-91J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-154
0.052
0
RP11-15H20.6
hsa-miR-182-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594766
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-277
0.052
1
RP11-121G22.3
hsa-miR-182-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547762
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-445
0.047
5
6mer
360-370
0.005
2
XLOC_009140
hsa-miR-182-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019094
Biotype: transcript isomorph
Gene id: XLOC_009140
Gene Name: XLOC_009140
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-86
0.052
1
CTD-2541M15.1
hsa-miR-182-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000525186
Biotype: antisense
Gene id: ENSG00000249898
Gene Name: CTD-2541M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
665-688
0.037
4
7mer
681-695
0.015
1
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