LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP4-665J23.1
hsa-miR-182-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455680
Biotype: retained_intron
Gene id: ENSG00000233593
Gene Name: RP4-665J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
48-55
0.055
1
CTA-373H7.7
hsa-miR-182-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000382641
Biotype: lincRNA
Gene id: ENSG00000206028
Gene Name: CTA-373H7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2235-2251
0.055
6
TEX41
hsa-miR-182-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608432
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
561-580
0.054
7
C21orf15
hsa-miR-182-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026755.1
Biotype: lincRNA
Gene id: NR_026755.1 (gene)
Gene Name: C21orf15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-658
0.045
0
6mer
1246-1266
0.009
0
RP11-1085N6.3
hsa-miR-182-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554597
Biotype: antisense
Gene id: ENSG00000259133
Gene Name: RP11-1085N6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-46
0.054
11
GRM7-AS3
hsa-miR-182-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412629
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
222-245
0.054
1
XLOC_006128
hsa-miR-182-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
992-1011
0.047
0
6mer
614-638
0.007
0
RP11-1437A8.4
hsa-miR-182-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565847
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-114
0.054
0
RP11-204E9.1
hsa-miR-182-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447728
Biotype: lincRNA
Gene id: ENSG00000231754
Gene Name: RP11-204E9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-270
0.054
9
RP11-538D16.2
hsa-miR-182-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411509
Biotype: lincRNA
Gene id: ENSG00000224810
Gene Name: RP11-538D16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1077-1102
0.027
0
8mer
2184-2210
0.025
1
6mer
2349-2372
0.003
Not Conserved
XLOC_012850
hsa-miR-182-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026527
Biotype: transcript isomorph
Gene id: XLOC_012850
Gene Name: XLOC_012850
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1526-1535
0.028
7
7mer
179-206
0.026
7
MIR490
hsa-miR-182-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000425981
Biotype: antisense
Gene id: ENSG00000234352
Gene Name: MIR490
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-532
0.054
5
RP11-450K4.1
hsa-miR-182-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_045382.1
Biotype: antisense
Gene id: NR_045382.1 (gene)
Gene Name: RP11-450K4.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
323-342
0.054
4
RP11-614F17.2
hsa-miR-182-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514222
Biotype: lincRNA
Gene id: ENSG00000251676
Gene Name: RP11-614F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
344-359
0.054
0
TTN-AS1
hsa-miR-182-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000586831
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
599-624
0.054
12
XLOC_007734
hsa-miR-182-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016354
Biotype: transcript isomorph
Gene id: XLOC_007734
Gene Name: XLOC_007734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
555-579
0.044
1
7mer
127-141
0.010
Not Conserved
CTD-2291D10.2
hsa-miR-182-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000565584
Biotype: lincRNA
Gene id: ENSG00000261558
Gene Name: CTD-2291D10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-229
0.053
0
RP11-81H3.2
hsa-miR-182-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548427
Biotype: lincRNA
Gene id: ENSG00000251138
Gene Name: RP11-81H3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-50
0.048
1
6mer
267-291
0.005
0
XLOC_012558
hsa-miR-182-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025741
Biotype: transcript isomorph
Gene id: XLOC_012558
Gene Name: XLOC_012558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
863-884
0.053
1
LINC00293
hsa-miR-182-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521715
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
960-980
0.025
0
6mer
346-359
0.014
1
7mer
744-771
0.014
0
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