LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
XIST
hsa-miR-181a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433732
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
275-298
0.026
5
XLOC_002878
hsa-miR-181a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006278
Biotype: transcript isomorph
Gene id: XLOC_002878
Gene Name: XLOC_002878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2884-2901
0.014
1
6mer
144-164
0.004
1
6mer
119-135
0.004
0
6mer
2008-2018
0.002
0
6mer
1262-1285
0.002
1
KB-68A7.2
hsa-miR-181a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000622854
Biotype: lincRNA
Gene id: ENSG00000277352
Gene Name: KB-68A7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
557-582
0.018
1
6mer
602-627
0.008
0
CTA-342B11.3
hsa-miR-181a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24514-24533
0.009
0
7mer
2015-2030
0.008
Not Conserved
7mer
18415-18430
0.004
1
7mer
20123-20141
0.003
1
6mer
12826-12840
0.002
1
CTD-2024F21.1
hsa-miR-181a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622792
Biotype: sense_intronic
Gene id: ENSG00000277173
Gene Name: CTD-2024F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
138-163
0.014
6
6mer
170-193
0.006
2
6mer
691-718
0.006
1
ITPK1-AS1
hsa-miR-181a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553639
Biotype: antisense
Gene id: ENSG00000258730
Gene Name: ITPK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4368-4391
0.008
2
6mer
3992-4010
0.006
6
6mer
408-426
0.005
0
6mer
3955-3966
0.003
2
6mer
1276-1296
0.002
0
6mer
2547-2567
0.001
Not Conserved
RP11-169F17.1
hsa-miR-181a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584671
Biotype: retained_intron
Gene id: ENSG00000263711
Gene Name: RP11-169F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-151
0.015
Not Conserved
7mer
110-131
0.011
0
RP11-544D21.2
hsa-miR-181a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000561926
Biotype: lincRNA
Gene id: ENSG00000259776
Gene Name: RP11-544D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-75
0.025
1
EIF3J-AS1
hsa-miR-181a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000313807
Biotype: lincRNA
Gene id: ENSG00000179523
Gene Name: EIF3J-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2162-2182
0.023
1
6mer
1549-1569
0.002
1
AC104134.2
hsa-miR-181a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413234
Biotype: antisense
Gene id: ENSG00000225420
Gene Name: AC104134.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
943-965
0.025
1
LINC01082
hsa-miR-181a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000601250
Biotype: lincRNA
Gene id: ENSG00000269186
Gene Name: LINC01082
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-106
0.025
8
RP11-298O21.2
hsa-miR-181a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475324
Biotype: lincRNA
Gene id: ENSG00000240292
Gene Name: RP11-298O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
82-89
0.019
1
6mer
407-426
0.006
1
RP11-335E6.2
hsa-miR-181a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455038
Biotype: lincRNA
Gene id: ENSG00000203605
Gene Name: RP11-335E6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
430-445
0.014
0
7mer
244-262
0.012
3
XLOC_003782
hsa-miR-181a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008327
Biotype: transcript isomorph
Gene id: XLOC_003782
Gene Name: XLOC_003782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-382
0.022
6
6mer
2791-2807
0.002
1
6mer
498-523
0.001
1
FLJ38122
hsa-miR-181a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000438622
Biotype: lincRNA
Gene id: ENSG00000227508
Gene Name: FLJ38122
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-165
0.019
2
6mer
186-197
0.006
2
XLOC_007778
hsa-miR-181a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016407
Biotype: transcript isomorph
Gene id: XLOC_007778
Gene Name: XLOC_007778
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-765
0.025
Not Conserved
XLOC_008109
hsa-miR-181a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017287
Biotype: transcript isomorph
Gene id: XLOC_008109
Gene Name: XLOC_008109
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-575
0.025
1
LOC339593
hsa-miR-181a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_038972.1
Biotype: lincRNA
Gene id: NR_038972.1 (gene)
Gene Name: LOC339593
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-193
0.014
2
6mer
436-462
0.005
2
6mer
1932-1953
0.004
0
6mer
1174-1198
0.003
1
RP11-350A1.2
hsa-miR-181a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565943
Biotype: lincRNA
Gene id: ENSG00000260959
Gene Name: RP11-350A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
281-295
0.025
1
RP11-690D19.3
hsa-miR-181a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561652
Biotype: sense_overlapping
Gene id: ENSG00000260966
Gene Name: RP11-690D19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
950-971
0.008
1
6mer
4946-4965
0.008
2
6mer
500-515
0.006
3
6mer
873-888
0.003
4
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