LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
FLJ22763
hsa-miR-181a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033977.1
Biotype: lincRNA
Gene id: NR_033977.1 (gene)
Gene Name: FLJ22763
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1072-1090
0.017
1
7mer
1307-1330
0.009
2
CTD-2044J15.2
hsa-miR-181a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606434
Biotype: lincRNA
Gene id: ENSG00000272520
Gene Name: CTD-2044J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2516-2531
0.013
1
6mer
3031-3057
0.006
1
6mer
822-847
0.003
1
7mer
2073-2100
0.002
0
6mer
2321-2344
0.002
1
6mer
1472-1497
0.001
Not Conserved
LINC00353
hsa-miR-181a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000435401
Biotype: lincRNA
Gene id: ENSG00000236176
Gene Name: LINC00353
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-153
0.026
1
XLOC_011745
hsa-miR-181a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024428
Biotype: transcript isomorph
Gene id: XLOC_011745
Gene Name: XLOC_011745
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-374
0.026
1
LOC100507577
hsa-miR-181a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_040677.1
Biotype: sense
Gene id: NR_040677.1 (gene)
Gene Name: LOC100507577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
649-667
0.007
0
7mer
2145-2153
0.006
1
6mer
2028-2047
0.005
2
6mer
412-429
0.003
1
6mer
2175-2202
0.003
3
6mer
1101-1117
0.002
4
XLOC_007169
hsa-miR-181a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015112
Biotype: transcript isomorph
Gene id: XLOC_007169
Gene Name: XLOC_007169
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-148
0.026
1
RP11-571E6.3
hsa-miR-181a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000366224
Biotype: lincRNA
Gene id: ENSG00000203402
Gene Name: RP11-571E6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
152-165
0.026
0
AP000469.2
hsa-miR-181a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416218
Biotype: lincRNA
Gene id: ENSG00000224832
Gene Name: AP000469.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-315
0.014
0
7mer
971-995
0.013
Not Conserved
NPSR1-AS1
hsa-miR-181a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000428922
Biotype: retained_intron
Gene id: ENSG00000197085
Gene Name: NPSR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-113
0.026
3
LINC00665
hsa-miR-181a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000438368
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
18-31
0.024
1
6mer
691-715
0.003
Not Conserved
XLOC_001543
hsa-miR-181a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002942
Biotype: transcript isomorph
Gene id: XLOC_001543
Gene Name: XLOC_001543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
986-1008
0.012
2
7mer
573-590
0.007
0
6mer
1033-1043
0.004
1
6mer
287-311
0.003
1
RP11-861E21.2
hsa-miR-181a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589795
Biotype: antisense
Gene id: ENSG00000267199
Gene Name: RP11-861E21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4407-4429
0.013
6
6mer
305-319
0.004
0
6mer
565-574
0.004
0
6mer
4302-4325
0.003
0
6mer
2587-2608
0.002
1
LINC01020
hsa-miR-181a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508201
Biotype: lincRNA
Gene id: ENSG00000215231
Gene Name: LINC01020
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1673-1692
0.016
1
7mer
1498-1522
0.007
1
6mer
22-37
0.003
0
RP11-141A19.1
hsa-miR-181a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456002
Biotype: antisense
Gene id: ENSG00000229846
Gene Name: RP11-141A19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
519-546
0.010
7
7mer
189-208
0.009
1
6mer
635-653
0.008
5
SNHG6
hsa-miR-181a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520619
Biotype: lincRNA
Gene id: ENSG00000245910
Gene Name: SNHG6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-166
0.026
4
RP11-166D19.1
hsa-miR-181a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
16-38
0.010
6
7mer
553-566
0.010
3
6mer
1200-1217
0.003
2
6mer
2588-2605
0.003
4
GUSBP11
hsa-miR-181a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000455485
Biotype: processed_transcript
Gene id: ENSG00000228315
Gene Name: GUSBP11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2112-2133
0.013
0
7mer
3465-3484
0.007
1
7mer
144-166
0.006
1
FLJ22763
hsa-miR-181a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467240
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1072-1090
0.017
1
7mer
1307-1330
0.009
2
ZNF337-AS1
hsa-miR-181a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000420803
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
592-615
0.026
0
LINC00939
hsa-miR-181a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545784
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-301
0.015
2
9mer
1213-1239
0.011
0
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