LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_013502
hsa-miR-181a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027863
Biotype: transcript isomorph
Gene id: XLOC_013502
Gene Name: XLOC_013502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4361-4378
0.013
0
6mer
260-281
0.009
0
6mer
1047-1066
0.004
0
RP11-335O4.3
hsa-miR-181a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000425371
Biotype: antisense
Gene id: ENSG00000235872
Gene Name: RP11-335O4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-74
0.017
5
6mer
331-349
0.005
2
6mer
233-259
0.004
0
LINC00665
hsa-miR-181a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590622
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
53-66
0.024
1
6mer
726-750
0.002
Not Conserved
RP11-317J10.4
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520459
Biotype: lincRNA
Gene id: ENSG00000254380
Gene Name: RP11-317J10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
628-645
0.018
2
7mer
534-560
0.009
1
RP11-84G21.1
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552885
Biotype: antisense
Gene id: ENSG00000257557
Gene Name: RP11-84G21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-121
0.011
1
6mer
3148-3174
0.006
2
6mer
2637-2652
0.004
0
6mer
2459-2463
0.004
1
6mer
1035-1055
0.002
3
XLOC_011178
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023308
Biotype: transcript isomorph
Gene id: XLOC_011178
Gene Name: XLOC_011178
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3108-3123
0.019
0
6mer
3724-3746
0.008
1
MIR133A1HG
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581072
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3662-3685
0.013
4
6mer
3544-3563
0.010
14
6mer
3789-3810
0.004
2
LINC01152
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000472655
Biotype: lincRNA
Gene id: ENSG00000256124
Gene Name: LINC01152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3296-3318
0.009
6
7mer
3347-3365
0.007
1
6mer
3522-3543
0.007
1
6mer
1316-1341
0.003
3
6mer
2280-2301
0.001
1
AC008088.4
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000563569
Biotype: lincRNA
Gene id: ENSG00000260907
Gene Name: AC008088.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-366
0.019
1
6mer
709-727
0.007
0
RP11-37B2.1
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000621883
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2755-2778
0.017
4
6mer
272-293
0.005
1
6mer
704-731
0.003
1
6mer
2331-2349
0.002
1
SOX2-OT
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000461063
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
508-528
0.027
2
AC105402.4
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601658
Biotype: antisense
Gene id: ENSG00000231079
Gene Name: AC105402.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-72
0.027
0
AC022007.5
hsa-miR-181a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420091
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1254-1279
0.012
0
6mer
849-871
0.012
0
6mer
571-596
0.002
Not Conserved
STARD13-IT1
hsa-miR-181a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456087
Biotype: sense_intronic
Gene id: ENSG00000230300
Gene Name: STARD13-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-240
0.026
4
XLOC_004545
hsa-miR-181a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010086
Biotype: transcript isomorph
Gene id: XLOC_004545
Gene Name: XLOC_004545
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
878-890
0.021
0
6mer
1224-1245
0.006
1
RP11-211N8.2
hsa-miR-181a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446626
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1790-1810
0.017
0
6mer
939-958
0.010
1
XLOC_010450
hsa-miR-181a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021500
Biotype: transcript isomorph
Gene id: XLOC_010450
Gene Name: XLOC_010450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-252
0.017
1
7mer
695-715
0.010
0
LINC01105
hsa-miR-181a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000391666
Biotype: processed_transcript
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3165-3185
0.019
1
6mer
309-328
0.003
1
6mer
1632-1657
0.003
3
6mer
2159-2174
0.002
1
LINC00971
hsa-miR-181a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484892
Biotype: lincRNA
Gene id: ENSG00000242641
Gene Name: LINC00971
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-52
0.010
0
8mer
4667-4693
0.007
1
6mer
4468-4483
0.002
1
6mer
2894-2917
0.002
0
6mer
2531-2555
0.002
2
6mer
4131-4146
0.002
0
6mer
1703-1727
0.001
0
6mer
2838-2860
0.001
Not Conserved
CTD-2286N8.2
hsa-miR-181a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586389
Biotype: sense_intronic
Gene id: ENSG00000267655
Gene Name: CTD-2286N8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
612-638
0.022
3
6mer
11-35
0.004
0
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