LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
MALAT1
hsa-miR-181a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4796-4817
0.009
2
6mer
5848-5867
0.006
8
6mer
5227-5247
0.003
4
6mer
4005-4032
0.003
4
6mer
3790-3809
0.002
2
6mer
6274-6301
0.002
1
6mer
6010-6028
0.002
1
6mer
5323-5341
0.001
1
RP1-101A2.1
hsa-miR-181a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000610430
Biotype: sense_intronic
Gene id: ENSG00000273893
Gene Name: RP1-101A2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-372
0.027
1
RP11-317M11.1
hsa-miR-181a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506950
Biotype: sense_intronic
Gene id: ENSG00000249341
Gene Name: RP11-317M11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-480
0.022
1
6mer
1467-1493
0.005
0
XLOC_006079
hsa-miR-181a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013003
Biotype: transcript isomorph
Gene id: XLOC_006079
Gene Name: XLOC_006079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
749-770
0.017
1
6mer
252-263
0.010
1
XLOC_011997
hsa-miR-181a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024238
Biotype: transcript isomorph
Gene id: XLOC_011997
Gene Name: XLOC_011997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
675-700
0.027
4
NEAT1
hsa-miR-181a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3125-3150
0.022
2
7mer
1063-1088
0.004
3
6mer
1299-1325
0.002
0
LINC01198
hsa-miR-181a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000458282
Biotype: lincRNA
Gene id: ENSG00000231817
Gene Name: LINC01198
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-492
0.027
0
RP11-159D12.2
hsa-miR-181a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577267
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3996-4016
0.011
1
7mer
964-969
0.005
Not Conserved
6mer
1561-1586
0.003
5
7mer
2886-2905
0.003
1
6mer
1822-1840
0.003
3
6mer
2572-2594
0.002
2
C1orf132
hsa-miR-181a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1534-1556
0.008
2
7mer
664-678
0.007
1
8mer
3857-3876
0.006
1
8mer
10283-10303
0.003
1
6mer
9493-9508
0.001
1
6mer
10872-10895
0.001
1
6mer
3667-3682
0.001
2
RP11-450H6.3
hsa-miR-181a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000567967
Biotype: lincRNA
Gene id: ENSG00000260385
Gene Name: RP11-450H6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-176
0.025
0
6mer
1192-1213
0.003
0
AC087430.1
hsa-miR-181a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451707
Biotype: lincRNA
Gene id: ENSG00000235158
Gene Name: AC087430.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3143-3167
0.022
0
6mer
830-846
0.005
4
RP11-44F14.8
hsa-miR-181a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571340
Biotype: lincRNA
Gene id: ENSG00000262714
Gene Name: RP11-44F14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
845-863
0.011
1
6mer
1102-1128
0.010
1
6mer
891-905
0.006
1
RP11-25D3.1
hsa-miR-181a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580975
Biotype: sense_intronic
Gene id: ENSG00000266237
Gene Name: RP11-25D3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-372
0.016
3
6mer
779-804
0.008
3
6mer
564-583
0.003
0
RPL34-AS1
hsa-miR-181a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509984
Biotype: lincRNA
Gene id: ENSG00000234492
Gene Name: RPL34-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-242
0.024
1
6mer
535-559
0.003
1
XLOC_010686
hsa-miR-181a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021683
Biotype: transcript isomorph
Gene id: XLOC_010686
Gene Name: XLOC_010686
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-153
0.027
1
CTC-242N15.1
hsa-miR-181a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000611331
Biotype: lincRNA
Gene id: ENSG00000233828
Gene Name: CTC-242N15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1187-1204
0.020
1
7mer
1075-1088
0.007
2
DYNLL1-AS1
hsa-miR-181a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_038854.1
Biotype: antisense
Gene id: NR_038854.1 (gene)
Gene Name: DYNLL1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-269
0.022
2
6mer
585-597
0.002
1
6mer
329-348
0.002
0
RP1-155D22.2
hsa-miR-181a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564697
Biotype: lincRNA
Gene id: ENSG00000260422
Gene Name: RP1-155D22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
712-732
0.012
1
6mer
1535-1556
0.008
2
6mer
314-335
0.004
1
6mer
176-201
0.003
1
CTD-2373J6.2
hsa-miR-181a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000624106
Biotype: TEC
Gene id: ENSG00000255647
Gene Name: CTD-2373J6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-571
0.023
0
6mer
234-255
0.004
1
LINC00382
hsa-miR-181a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000427918
Biotype: lincRNA
Gene id: ENSG00000229175
Gene Name: LINC00382
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-252
0.017
1
7mer
633-653
0.010
0
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