LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
RP11-533E19.5
hsa-miR-181a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000567904
Biotype: lincRNA
Gene id: ENSG00000260360
Gene Name: RP11-533E19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-466
0.012
3
6mer
1223-1248
0.007
2
6mer
710-732
0.006
4
6mer
517-542
0.004
1
RP11-182L21.5
hsa-miR-181a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000606384
Biotype: sense_intronic
Gene id: ENSG00000272489
Gene Name: RP11-182L21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-237
0.021
0
7mer
1260-1277
0.008
0
XLOC_003590
hsa-miR-181a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008138
Biotype: transcript isomorph
Gene id: XLOC_003590
Gene Name: XLOC_003590
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-235
0.029
1
SC22CB-109E1.1
hsa-miR-181a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3660-3684
0.007
4
6mer
126-149
0.006
1
6mer
421-442
0.005
1
6mer
9216-9240
0.004
1
6mer
4151-4177
0.003
2
6mer
8246-8269
0.002
1
6mer
4463-4478
0.002
1
6mer
6250-6272
0.001
0
AC092535.3
hsa-miR-181a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000417557
Biotype: antisense
Gene id: ENSG00000227189
Gene Name: AC092535.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1760-1779
0.016
1
6mer
2070-2092
0.010
5
6mer
1449-1467
0.003
1
XLOC_002476
hsa-miR-181a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003490
Biotype: transcript isomorph
Gene id: XLOC_002476
Gene Name: XLOC_002476
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
948-966
0.018
9
6mer
738-757
0.006
4
6mer
496-523
0.005
2
AC007740.1
hsa-miR-181a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446838
Biotype: antisense
Gene id: ENSG00000237750
Gene Name: AC007740.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1305-1323
0.021
2
7mer
598-617
0.005
Not Conserved
6mer
2250-2270
0.003
2
ZSCAN16-AS1
hsa-miR-181a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000600652
Biotype: antisense
Gene id: ENSG00000269293
Gene Name: ZSCAN16-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
166-179
0.016
5
8mer
1177-1201
0.013
1
MAGI2-AS3
hsa-miR-181a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000618603
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-374
0.023
0
6mer
328-343
0.006
1
RP6-191P20.4
hsa-miR-181a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430140
Biotype: antisense
Gene id: ENSG00000236064
Gene Name: RP6-191P20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-49
0.015
2
6mer
136-162
0.009
3
6mer
371-393
0.006
3
XLOC_011007
hsa-miR-181a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022728
Biotype: transcript isomorph
Gene id: XLOC_011007
Gene Name: XLOC_011007
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-114
0.029
5
RP11-99L13.1
hsa-miR-181a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553386
Biotype: lincRNA
Gene id: ENSG00000258487
Gene Name: RP11-99L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-115
0.029
5
RP5-991G20.6
hsa-miR-181a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000624116
Biotype: lincRNA
Gene id: ENSG00000279206
Gene Name: RP5-991G20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-77
0.029
3
XLOC_004072
hsa-miR-181a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007434
Biotype: transcript isomorph
Gene id: XLOC_004072
Gene Name: XLOC_004072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-323
0.014
4
8mer+mismatch
358-376
0.007
4
6mer
894-919
0.005
2
6mer
159-182
0.003
0
ZNF674-AS1
hsa-miR-181a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000421685
Biotype: lincRNA
Gene id: ENSG00000230844
Gene Name: ZNF674-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-572
0.021
1
6mer
95-118
0.005
1
6mer
832-852
0.003
1
AC005614.3
hsa-miR-181a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598952
Biotype: antisense
Gene id: ENSG00000269296
Gene Name: AC005614.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2791-2811
0.023
1
6mer
670-686
0.004
1
6mer
1229-1256
0.002
0
CTD-2410N18.4
hsa-miR-181a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000520515
Biotype: retained_intron
Gene id: ENSG00000273345
Gene Name: CTD-2410N18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-229
0.026
4
6mer
1066-1093
0.003
1
XLOC_008295
hsa-miR-181a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5259-5273
0.029
Not Conserved
FLJ26245
hsa-miR-181a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566900
Biotype: lincRNA
Gene id: ENSG00000261122
Gene Name: FLJ26245
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
966-981
0.017
0
6mer
1052-1073
0.012
0
XLOC_007970
hsa-miR-181a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016919
Biotype: transcript isomorph
Gene id: XLOC_007970
Gene Name: XLOC_007970
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-572
0.021
1
6mer
95-118
0.005
1
6mer
832-852
0.003
1
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