LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
AC005154.6
hsa-miR-181a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1370-1392
0.011
1
7mer
6848-6866
0.006
0
6mer
371-392
0.005
0
6mer
9931-9958
0.002
0
6mer
11352-11369
0.002
0
6mer
12931-12951
0.001
0
6mer
11550-11572
0.001
0
6mer
7882-7904
0.001
0
6mer
6797-6824
0.001
1
6mer
12904-12926
0.001
1
RP11-565A3.2
hsa-miR-181a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514767
Biotype: lincRNA
Gene id: ENSG00000250590
Gene Name: RP11-565A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-136
0.031
0
LINC00887
hsa-miR-181a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024480.1
Biotype: lincRNA
Gene id: NR_024480.1 (gene)
Gene Name: LINC00887
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
837-857
0.011
2
7mer
404-419
0.008
2
6mer
99-124
0.005
0
7mer
2692-2709
0.005
0
6mer
1916-1934
0.002
Not Conserved
XLOC_003641
hsa-miR-181a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008193
Biotype: transcript isomorph
Gene id: XLOC_003641
Gene Name: XLOC_003641
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4733-4745
0.012
1
7mer
3973-3998
0.008
1
7mer
2124-2142
0.003
1
6mer
4295-4311
0.003
1
6mer
4683-4704
0.003
0
6mer
1544-1565
0.002
1
XLOC_008611
hsa-miR-181a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018334
Biotype: transcript isomorph
Gene id: XLOC_008611
Gene Name: XLOC_008611
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
665-685
0.031
1
DLX6-AS1
hsa-miR-181a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452769
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-119
0.028
5
6mer
2031-2056
0.002
Not Conserved
6mer
1737-1758
0.001
0
RP11-375O18.2
hsa-miR-181a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000413352
Biotype: lincRNA
Gene id: ENSG00000233086
Gene Name: RP11-375O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-467
0.014
1
7mer
1614-1632
0.007
2
6mer
1477-1491
0.005
3
6mer
47-64
0.005
2
XLOC_010828
hsa-miR-181a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022502
Biotype: transcript isomorph
Gene id: XLOC_010828
Gene Name: XLOC_010828
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-219
0.024
1
6mer
451-476
0.004
1
6mer
264-287
0.003
0
RP11-436F21.1
hsa-miR-181a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421507
Biotype: lincRNA
Gene id: ENSG00000226566
Gene Name: RP11-436F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-66
0.017
2
7mer
41-59
0.014
0
RP11-439L18.1
hsa-miR-181a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000417650
Biotype: lincRNA
Gene id: ENSG00000232618
Gene Name: RP11-439L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-301
0.031
2
XLOC_013010
hsa-miR-181a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1602-1620
0.017
0
6mer
1133-1147
0.013
0
NUTM2B-AS1
hsa-miR-181a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-366
0.011
2
9mer
2856-2877
0.010
1
6mer
4063-4071
0.003
1
6mer
6800-6810
0.003
0
6mer
6574-6590
0.002
0
6mer
3795-3815
0.001
1
6mer
2814-2840
0.001
1
RP11-155G14.6
hsa-miR-181a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000493710
Biotype: processed_transcript
Gene id: ENSG00000240758
Gene Name: RP11-155G14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-578
0.017
4
7mer
448-470
0.014
4
RP11-130F10.1
hsa-miR-181a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507023
Biotype: antisense
Gene id: ENSG00000250131
Gene Name: RP11-130F10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
865-888
0.014
1
8mer
1645-1664
0.009
2
6mer
1234-1258
0.004
4
6mer
1100-1104
0.003
2
LINC01248
hsa-miR-181a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453678
Biotype: lincRNA
Gene id: ENSG00000230090
Gene Name: LINC01248
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-482
0.025
0
6mer
883-903
0.006
0
RP11-166D19.1
hsa-miR-181a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528986
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
9-31
0.011
6
7mer
546-559
0.010
3
6mer
2581-2598
0.004
4
6mer
1193-1210
0.003
2
6mer
3132-3154
0.003
1
LINC00619
hsa-miR-181a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000374432
Biotype: lincRNA
Gene id: ENSG00000204187
Gene Name: LINC00619
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
926-942
0.031
1
XLOC_013064
hsa-miR-181a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-362
0.017
1
6mer
2276-2295
0.009
1
6mer
1463-1482
0.004
0
XLOC_006982
hsa-miR-181a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014915
Biotype: transcript isomorph
Gene id: XLOC_006982
Gene Name: XLOC_006982
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-188
0.031
1
RP11-111J6.2
hsa-miR-181a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000565944
Biotype: lincRNA
Gene id: ENSG00000260331
Gene Name: RP11-111J6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-53
0.031
1
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