LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
RP11-670N15.1
hsa-miR-181a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526362
Biotype: antisense
Gene id: ENSG00000255167
Gene Name: RP11-670N15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-473
0.015
2
6mer
489-506
0.009
5
7mer
82-100
0.009
0
LINC00880
hsa-miR-181a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000471357
Biotype: lincRNA
Gene id: ENSG00000243629
Gene Name: LINC00880
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-49
0.023
2
7mer
1613-1632
0.010
3
XLOC_005902
hsa-miR-181a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012819
Biotype: transcript isomorph
Gene id: XLOC_005902
Gene Name: XLOC_005902
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
730-754
0.017
0
7mer
19-40
0.016
1
CTA-544A11.1
hsa-miR-181a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11111-11130
0.008
4
8mer
5593-5617
0.008
2
6mer
11832-11836
0.004
0
6mer
9102-9128
0.003
3
6mer
10395-10422
0.003
3
6mer
7803-7827
0.002
1
6mer
7272-7288
0.002
2
6mer
4444-4471
0.002
1
6mer
3524-3548
0.001
0
XLOC_000679
hsa-miR-181a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001378
Biotype: transcript isomorph
Gene id: XLOC_000679
Gene Name: XLOC_000679
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
657-682
0.017
1
6mer
803-827
0.015
1
RP1-313L4.3
hsa-miR-181a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451545
Biotype: antisense
Gene id: ENSG00000232194
Gene Name: RP1-313L4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
613-636
0.024
1
6mer
478-502
0.008
2
RP11-305L7.3
hsa-miR-181a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457976
Biotype: lincRNA
Gene id: ENSG00000237422
Gene Name: RP11-305L7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-214
0.021
1
7mer
15-37
0.009
1
6mer
71-94
0.003
0
RP11-111F5.4
hsa-miR-181a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429818
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-463
0.032
0
RP11-380D15.3
hsa-miR-181a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431983
Biotype: lincRNA
Gene id: ENSG00000230843
Gene Name: RP11-380D15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-294
0.032
1
PROX1-AS1
hsa-miR-181a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
897-919
0.011
1
8mer
3784-3804
0.009
1
8mer
1834-1857
0.007
1
7mer
719-738
0.003
0
6mer
4510-4525
0.003
2
LINC00880
hsa-miR-181a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_034007.1
Biotype: lincRNA
Gene id: NR_034007.1 (gene)
Gene Name: LINC00880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-49
0.023
2
7mer
1613-1632
0.010
3
RP11-486L19.2
hsa-miR-181a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565643
Biotype: antisense
Gene id: ENSG00000250685
Gene Name: RP11-486L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
678-698
0.025
0
6mer
809-829
0.003
1
6mer
643-659
0.003
1
6mer
1096-1117
0.002
1
CTB-92J24.2
hsa-miR-181a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594230
Biotype: sense_intronic
Gene id: ENSG00000269397
Gene Name: CTB-92J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
524-543
0.016
0
6mer
776-799
0.012
0
6mer
247-272
0.004
Not Conserved
RP11-426C22.4
hsa-miR-181a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566070
Biotype: lincRNA
Gene id: ENSG00000259807
Gene Name: RP11-426C22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2065-2089
0.010
1
7mer
1464-1486
0.007
0
7mer
1368-1381
0.005
0
6mer
1696-1720
0.003
0
6mer
1917-1941
0.003
0
6mer
927-951
0.002
1
6mer
1836-1860
0.002
0
XLOC_003303
hsa-miR-181a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005401
Biotype: transcript isomorph
Gene id: XLOC_003303
Gene Name: XLOC_003303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-48
0.023
2
7mer
1612-1631
0.010
3
TMEM161B-AS1
hsa-miR-181a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512724
Biotype: antisense
Gene id: ENSG00000247828
Gene Name: TMEM161B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-508
0.016
2
7mer
476-493
0.016
1
AC097461.4
hsa-miR-181a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446709
Biotype: antisense
Gene id: ENSG00000234193
Gene Name: AC097461.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-51
0.016
1
7mer
274-287
0.013
6
6mer
423-446
0.003
1
LINC01227
hsa-miR-181a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567317
Biotype: lincRNA
Gene id: ENSG00000260737
Gene Name: LINC01227
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-431
0.032
1
CTD-2015G9.1
hsa-miR-181a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563331
Biotype: lincRNA
Gene id: ENSG00000260026
Gene Name: CTD-2015G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-340
0.032
1
RP11-299H22.6
hsa-miR-181a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568092
Biotype: lincRNA
Gene id: ENSG00000261296
Gene Name: RP11-299H22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
442-462
0.014
1
6mer
842-846
0.008
1
7mer
1358-1381
0.006
1
6mer
2345-2366
0.004
1
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