LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
LOC101926935
hsa-miR-181a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2211-2234
0.032
0
7mer
413-439
0.006
Not Conserved
LINC00158
hsa-miR-181a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000332587
Biotype: lincRNA
Gene id: ENSG00000185433
Gene Name: LINC00158
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
747-767
0.029
1
6mer
190-215
0.005
1
6mer
1087-1113
0.005
1
RP11-637A17.2
hsa-miR-181a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500695
Biotype: lincRNA
Gene id: ENSG00000247363
Gene Name: RP11-637A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-379
0.015
Not Conserved
7mer
203-228
0.012
1
6mer
101-112
0.009
3
6mer
1265-1284
0.002
0
XLOC_010666
hsa-miR-181a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022061
Biotype: transcript isomorph
Gene id: XLOC_010666
Gene Name: XLOC_010666
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
690-700
0.014
6
7mer
274-290
0.013
2
7mer
301-313
0.011
2
CTC-523E23.6
hsa-miR-181a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595783
Biotype: lincRNA
Gene id: ENSG00000269037
Gene Name: CTC-523E23.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1603-1620
0.038
1
KCNMA1-AS1
hsa-miR-181a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608791
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-39
0.038
1
EFCAB14-AS1
hsa-miR-181a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418985
Biotype: antisense
Gene id: ENSG00000228237
Gene Name: EFCAB14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
401-425
0.038
1
RP11-76I14.1
hsa-miR-181a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000537492
Biotype: lincRNA
Gene id: ENSG00000256637
Gene Name: RP11-76I14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-161
0.038
7
XXyac-YX65C7_A.3
hsa-miR-181a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457833
Biotype: lincRNA
Gene id: ENSG00000233085
Gene Name: XXyac-YX65C7_A.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-544
0.038
1
CTD-3064H18.4
hsa-miR-181a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-497
0.011
1
6mer
2170-2183
0.007
1
7mer
1389-1413
0.006
1
6mer
1741-1766
0.005
1
6mer
1239-1260
0.004
1
6mer
2642-2663
0.004
1
XLOC_003475
hsa-miR-181a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008011
Biotype: transcript isomorph
Gene id: XLOC_003475
Gene Name: XLOC_003475
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-298
0.038
5
LMCD1-AS1
hsa-miR-181a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000452802
Biotype: antisense
Gene id: ENSG00000227110
Gene Name: LMCD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-184
0.033
1
6mer
494-516
0.004
1
DLX6-AS1
hsa-miR-181a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437331
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-26
0.035
5
6mer
1938-1963
0.002
Not Conserved
6mer
1644-1665
0.001
0
RP11-434H6.7
hsa-miR-181a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609183
Biotype: lincRNA
Gene id: ENSG00000273437
Gene Name: RP11-434H6.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-145
0.038
1
RP11-344B2.2
hsa-miR-181a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579580
Biotype: antisense
Gene id: ENSG00000264982
Gene Name: RP11-344B2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
640-661
0.032
2
6mer
436-448
0.006
5
CTA-992D9.8
hsa-miR-181a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623947
Biotype: lincRNA
Gene id: ENSG00000280025
Gene Name: CTA-992D9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
143-164
0.027
0
7mer
521-545
0.007
2
7mer
1568-1585
0.003
1
RP11-989E6.10
hsa-miR-181a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568752
Biotype: lincRNA
Gene id: ENSG00000261200
Gene Name: RP11-989E6.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
476-493
0.020
0
6mer
192-214
0.009
0
6mer
267-276
0.009
0
ALMS1-IT1
hsa-miR-181a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046762.1
Biotype: sense
Gene id: NR_046762.1 (gene)
Gene Name: ALMS1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1262-1281
0.037
1
SNHG5
hsa-miR-181a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000623901
Biotype: lincRNA
Gene id: ENSG00000203875
Gene Name: SNHG5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
160-181
0.017
1
7mer
485-510
0.012
1
6mer
134-153
0.005
1
6mer
478-503
0.003
Not Conserved
RP11-96C23.5
hsa-miR-181a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433214
Biotype: processed_transcript
Gene id: ENSG00000271880
Gene Name: RP11-96C23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
792-809
0.011
1
9mer
2285-2302
0.010
0
7mer
98-116
0.008
1
6mer
2983-3004
0.005
1
6mer
2684-2705
0.002
2
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