LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001649
hsa-miR-181a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003843
Biotype: transcript isomorph
Gene id: XLOC_001649
Gene Name: XLOC_001649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
771-794
0.039
2
RP11-203B9.4
hsa-miR-181a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589263
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
93-107
0.025
1
6mer
328-352
0.014
10
RP11-469H8.6
hsa-miR-181a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550214
Biotype: antisense
Gene id: ENSG00000257588
Gene Name: RP11-469H8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-194
0.039
1
XLOC_006794
hsa-miR-181a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014698
Biotype: transcript isomorph
Gene id: XLOC_006794
Gene Name: XLOC_006794
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1327-1354
0.039
1
RP11-822E23.8
hsa-miR-181a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426261
Biotype: processed_transcript
Gene id: ENSG00000272780
Gene Name: RP11-822E23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
231-258
0.032
0
7mer
307-331
0.007
0
RP11-46C24.7
hsa-miR-181a-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570267
Biotype: antisense
Gene id: ENSG00000259877
Gene Name: RP11-46C24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-455
0.026
0
6mer
95-121
0.005
Not Conserved
6mer
2029-2037
0.005
0
6mer
384-409
0.003
0
RP11-164O23.7
hsa-miR-181a-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442684
Biotype: lincRNA
Gene id: ENSG00000243636
Gene Name: RP11-164O23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-456
0.017
0
7mer
265-285
0.015
2
6mer
111-137
0.004
0
6mer
419-444
0.003
0
RP11-473C19.1
hsa-miR-181a-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551372
Biotype: antisense
Gene id: ENSG00000257458
Gene Name: RP11-473C19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-228
0.039
2
NUTM2A-AS1
hsa-miR-181a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000366446
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-305
0.039
1
RP11-478C19.2
hsa-miR-181a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550231
Biotype: retained_intron
Gene id: ENSG00000258210
Gene Name: RP11-478C19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
618-633
0.022
6
7mer
377-394
0.016
6
LINC00448
hsa-miR-181a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000438352
Biotype: lincRNA
Gene id: ENSG00000228669
Gene Name: LINC00448
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-32
0.038
1
XLOC_008574
hsa-miR-181a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018787
Biotype: transcript isomorph
Gene id: XLOC_008574
Gene Name: XLOC_008574
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-261
0.038
4
RP11-76I14.1
hsa-miR-181a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609391
Biotype: lincRNA
Gene id: ENSG00000256637
Gene Name: RP11-76I14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-121
0.038
7
CTB-131B5.5
hsa-miR-181a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607850
Biotype: retained_intron
Gene id: ENSG00000254363
Gene Name: CTB-131B5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
793-807
0.011
3
7mer
5864-5881
0.010
2
7mer
484-510
0.008
3
6mer
5344-5363
0.007
6
6mer
2564-2586
0.003
1
LINC01234
hsa-miR-181a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547963
Biotype: lincRNA
Gene id: ENSG00000249550
Gene Name: LINC01234
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1697-1709
0.019
0
8mer
388-406
0.013
0
6mer
12-32
0.006
0
RP11-563J2.3
hsa-miR-181a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000391437
Biotype: lincRNA
Gene id: ENSG00000212743
Gene Name: RP11-563J2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-173
0.010
0
6mer
2299-2317
0.008
1
6mer
2307-2330
0.007
1
6mer
512-531
0.006
2
6mer
2007-2026
0.004
0
6mer
585-608
0.003
1
XLOC_004366
hsa-miR-181a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7687-7704
0.011
1
9mer
12562-12584
0.006
0
6mer
13653-13676
0.004
1
7mer
6597-6624
0.003
0
6mer
9289-9313
0.003
1
6mer
12174-12194
0.002
1
6mer
4098-4116
0.002
1
6mer
9807-9820
0.002
1
6mer
10914-10936
0.002
1
6mer
3019-3042
0.002
0
6mer
7478-7494
0.001
0
CTC-487M23.7
hsa-miR-181a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607284
Biotype: antisense
Gene id: ENSG00000272389
Gene Name: CTC-487M23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-285
0.028
Not Conserved
6mer
294-319
0.010
1
XLOC_007942
hsa-miR-181a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-467
0.021
1
7mer
468-485
0.006
3
7mer
6570-6595
0.004
Not Conserved
7mer
3796-3813
0.002
1
6mer
1545-1567
0.002
1
6mer
5621-5635
0.002
1
XLOC_010679
hsa-miR-181a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022076
Biotype: transcript isomorph
Gene id: XLOC_010679
Gene Name: XLOC_010679
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-285
0.029
1
6mer
191-212
0.005
1
6mer
1550-1575
0.004
0
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