LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
RP11-164P12.3
hsa-miR-181a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514269
Biotype: antisense
Gene id: ENSG00000251455
Gene Name: RP11-164P12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2224-2251
0.021
1
6mer
55-71
0.009
1
6mer
824-848
0.004
1
6mer
2316-2336
0.004
Not Conserved
7mer
561-582
0.003
Not Conserved
CTC-451A6.4
hsa-miR-181a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000442497
Biotype: lincRNA
Gene id: ENSG00000180081
Gene Name: CTC-451A6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
25-37
0.009
1
7mer
2543-2563
0.007
0
6mer
2377-2396
0.006
1
6mer
2293-2311
0.005
1
6mer
2209-2229
0.003
1
6mer
2462-2486
0.003
Not Conserved
6mer
1672-1684
0.002
1
6mer
1588-1602
0.002
3
6mer
1328-1344
0.002
0
6mer
1888-1908
0.002
0
SGMS1-AS1
hsa-miR-181a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443374
Biotype: antisense
Gene id: ENSG00000226200
Gene Name: SGMS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8534-8547
0.010
4
8mer
3288-3311
0.009
4
8mer
6589-6615
0.007
2
7mer
764-781
0.004
Not Conserved
6mer
6964-6985
0.003
4
6mer
4152-4173
0.002
2
6mer
7794-7810
0.002
3
6mer
11172-11196
0.002
0
6mer
9248-9268
0.002
0
XLOC_001053
hsa-miR-181a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001694
Biotype: transcript isomorph
Gene id: XLOC_001053
Gene Name: XLOC_001053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-353
0.038
3
6mer
693-709
0.002
0
AC093732.1
hsa-miR-181a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422201
Biotype: antisense
Gene id: ENSG00000233845
Gene Name: AC093732.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-215
0.030
7
7mer
305-328
0.010
1
RP11-76I14.1
hsa-miR-181a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000544869
Biotype: lincRNA
Gene id: ENSG00000256637
Gene Name: RP11-76I14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-140
0.040
7
LINC00469
hsa-miR-181a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000321800
Biotype: lincRNA
Gene id: ENSG00000177338
Gene Name: LINC00469
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-694
0.040
1
FLJ39080
hsa-miR-181a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523118
Biotype: lincRNA
Gene id: ENSG00000254349
Gene Name: FLJ39080
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1458-1476
0.010
3
7mer
1872-1888
0.008
2
7mer
1261-1279
0.007
0
7mer
236-257
0.006
0
7mer
763-784
0.006
1
6mer
1897-1918
0.004
1
RP5-1172N10.4
hsa-miR-181a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602481
Biotype: sense_intronic
Gene id: ENSG00000269941
Gene Name: RP5-1172N10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-217
0.040
7
RP11-332J15.2
hsa-miR-181a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510622
Biotype: lincRNA
Gene id: ENSG00000250060
Gene Name: RP11-332J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
187-202
0.019
1
8mer
160-181
0.016
0
6mer
504-530
0.006
1
RP11-65L3.1
hsa-miR-181a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000565104
Biotype: lincRNA
Gene id: ENSG00000260931
Gene Name: RP11-65L3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1977-1997
0.026
4
7mer
1986-2012
0.014
4
XLOC_007116
hsa-miR-181a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015035
Biotype: transcript isomorph
Gene id: XLOC_007116
Gene Name: XLOC_007116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
973-991
0.030
1
6mer
443-460
0.006
0
6mer
46-68
0.004
0
XLOC_008077
hsa-miR-181a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016941
Biotype: transcript isomorph
Gene id: XLOC_008077
Gene Name: XLOC_008077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1610-1635
0.023
5
8mer
1279-1305
0.011
2
6mer
384-400
0.006
1
CTC-296K1.3
hsa-miR-181a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585620
Biotype: lincRNA
Gene id: ENSG00000267505
Gene Name: CTC-296K1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
400-419
0.036
1
7mer
117-131
0.004
Not Conserved
RP11-950C14.3
hsa-miR-181a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554430
Biotype: antisense
Gene id: ENSG00000258646
Gene Name: RP11-950C14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
397-419
0.032
0
7mer
59-78
0.008
5
SNHG14
hsa-miR-181a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5099-5110
0.010
1
8mer
4335-4354
0.006
1
6mer
7155-7176
0.006
2
6mer
5656-5678
0.004
4
7mer
957-978
0.004
1
6mer
6595-6620
0.003
1
7mer
1735-1761
0.003
1
7mer
1223-1244
0.002
1
6mer
2204-2223
0.002
0
RP11-494O16.4
hsa-miR-181a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624617
Biotype: lincRNA
Gene id: ENSG00000279494
Gene Name: RP11-494O16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1363-1388
0.040
0
FLJ22763
hsa-miR-181a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000616779
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-187
0.026
1
7mer
404-427
0.014
2
RP11-448A19.1
hsa-miR-181a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608694
Biotype: lincRNA
Gene id: ENSG00000273329
Gene Name: RP11-448A19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6019-6043
0.017
1
7mer
6671-6690
0.017
1
7mer
1672-1698
0.006
2
RP11-44N12.5
hsa-miR-181a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606778
Biotype: lincRNA
Gene id: ENSG00000271930
Gene Name: RP11-44N12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-448
0.034
0
6mer
14-39
0.006
1
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