LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
LAMTOR5-AS1
hsa-miR-17-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000598454
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
638-658
0.021
1
6mer
562-583
0.004
1
XLOC_004167
hsa-miR-17-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008651
Biotype: transcript isomorph
Gene id: XLOC_004167
Gene Name: XLOC_004167
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2575-2596
0.007
8
7mer
3362-3387
0.006
0
6mer
151-177
0.006
1
9mer
1203-1227
0.005
1
6mer
2462-2487
0.001
3
XLOC_010354
hsa-miR-17-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021760
Biotype: transcript isomorph
Gene id: XLOC_010354
Gene Name: XLOC_010354
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
233-251
0.012
0
7mer
107-126
0.006
1
6mer
867-887
0.004
Not Conserved
6mer
370-394
0.003
Not Conserved
LAMTOR5-AS1
hsa-miR-17-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608719
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-600
0.021
1
6mer
352-373
0.004
1
RP11-212P7.2
hsa-miR-17-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608477
Biotype: lincRNA
Gene id: ENSG00000273270
Gene Name: RP11-212P7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2047-2071
0.006
2
9mer
689-708
0.005
0
9mer
3204-3228
0.004
0
9mer
4130-4154
0.004
0
9mer
4448-4468
0.003
Not Conserved
9mer
2886-2906
0.002
0
6mer
1995-2015
0.001
1
XLOC_005946
hsa-miR-17-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012378
Biotype: transcript isomorph
Gene id: XLOC_005946
Gene Name: XLOC_005946
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-66
0.025
0
XLOC_005493
hsa-miR-17-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011982
Biotype: transcript isomorph
Gene id: XLOC_005493
Gene Name: XLOC_005493
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-342
0.025
0
LAMTOR5-AS1
hsa-miR-17-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608635
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-637
0.021
1
6mer
291-312
0.004
1
RP4-717I23.3
hsa-miR-17-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411670
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-56
0.025
3
XLOC_006833
hsa-miR-17-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014749
Biotype: transcript isomorph
Gene id: XLOC_006833
Gene Name: XLOC_006833
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2018-2037
0.009
1
9mer
91-111
0.008
1
6mer
2875-2897
0.006
1
6mer
1675-1696
0.002
2
RP3-329A5.8
hsa-miR-17-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605896
Biotype: lincRNA
Gene id: ENSG00000272374
Gene Name: RP3-329A5.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-440
0.025
2
LAMTOR5-AS1
hsa-miR-17-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000616223
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-189
0.020
1
6mer
93-114
0.005
1
RP11-53B2.1
hsa-miR-17-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000624889
Biotype: TEC
Gene id: ENSG00000267529
Gene Name: RP11-53B2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
52-65
0.013
0
7mer
99-125
0.011
0
RP11-380B4.3
hsa-miR-17-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1000-1017
0.010
2
6mer
495-519
0.007
2
6mer
3855-3870
0.002
1
6mer
2323-2344
0.002
0
6mer
1006-1023
0.002
1
6mer
3091-3107
0.001
0
6mer
3910-3932
0.001
0
LINC00948
hsa-miR-17-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000621566
Biotype: retained_intron
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-74
0.025
6
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