LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
LINC00664
hsa-miR-17-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3406-3422
0.013
1
6mer
3457-3478
0.012
1
XLOC_012728
hsa-miR-17-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026218
Biotype: transcript isomorph
Gene id: XLOC_012728
Gene Name: XLOC_012728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5037-5061
0.009
0
9mer
4237-4259
0.007
0
6mer
4567-4584
0.004
0
6mer
1366-1392
0.003
2
6mer
3804-3827
0.002
1
TEN1-CDK3
hsa-miR-17-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037709.1
Biotype: sense
Gene id: NR_037709.1 (gene)
Gene Name: TEN1-CDK3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-215
0.023
1
6mer
810-829
0.002
1
RP4-671O14.7
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
12908-12928
0.007
1
9mer
9919-9938
0.004
0
6mer
18057-18080
0.003
0
9mer
8569-8589
0.002
0
7mer
14392-14416
0.002
1
6mer
2154-2174
0.002
3
9mer
5721-5745
0.002
Not Conserved
6mer
2118-2142
0.001
5
6mer
5876-5892
0.001
Not Conserved
LINC00243
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399196
Biotype: lincRNA
Gene id: ENSG00000214894
Gene Name: LINC00243
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
251-270
0.014
1
9mer
907-927
0.010
1
ERC2-IT1
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024615.1
Biotype: sense
Gene id: NR_024615.1 (gene)
Gene Name: ERC2-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
665-679
0.016
2
6mer
601-622
0.003
1
7mer
515-539
0.003
1
6mer
1250-1267
0.002
1
XLOC_009633
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020288
Biotype: transcript isomorph
Gene id: XLOC_009633
Gene Name: XLOC_009633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-105
0.015
1
9mer
609-633
0.010
1
LINC00608
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015390.1
Biotype: lincRNA
Gene id: NR_015390.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
851-870
0.025
0
CTD-2541M15.4
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607697
Biotype: lincRNA
Gene id: ENSG00000271927
Gene Name: CTD-2541M15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1794-1817
0.008
2
7mer
1272-1297
0.008
2
6mer
407-421
0.006
1
6mer
2226-2250
0.004
Not Conserved
XLOC_002185
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004320
Biotype: transcript isomorph
Gene id: XLOC_002185
Gene Name: XLOC_002185
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-193
0.025
0
CTD-2044J15.1
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503989
Biotype: lincRNA
Gene id: ENSG00000248677
Gene Name: CTD-2044J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2917-2943
0.010
1
8mer
2990-3006
0.008
0
6mer
1094-1121
0.003
1
6mer
1992-1999
0.002
1
6mer
2328-2353
0.002
1
6mer
1559-1572
0.001
0
RP11-397A16.3
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2465-2484
0.025
1
LAMTOR5-AS1
hsa-miR-17-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608499
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
766-786
0.020
1
6mer
690-711
0.004
1
XLOC_012613
hsa-miR-17-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026244
Biotype: transcript isomorph
Gene id: XLOC_012613
Gene Name: XLOC_012613
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-469
0.025
0
CTD-2207A17.1
hsa-miR-17-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508853
Biotype: lincRNA
Gene id: ENSG00000248461
Gene Name: CTD-2207A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-57
0.022
1
6mer
1812-1829
0.003
0
RP11-557J10.5
hsa-miR-17-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504710
Biotype: lincRNA
Gene id: ENSG00000248686
Gene Name: RP11-557J10.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-284
0.013
2
6mer
47-66
0.012
5
RP4-798P15.3
hsa-miR-17-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000464428
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
461-474
0.009
8
6mer
5636-5657
0.007
8
6mer
5278-5292
0.003
2
6mer
3450-3475
0.002
2
6mer
2039-2057
0.002
4
6mer
4159-4179
0.001
1
SSBP3-AS1
hsa-miR-17-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103541.1
Biotype: antisense
Gene id: NR_103541.1 (gene)
Gene Name: SSBP3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2532-2552
0.014
7
6mer
198-215
0.007
1
7mer
1852-1868
0.004
0
RP1-225E12.2
hsa-miR-17-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591102
Biotype: antisense
Gene id: ENSG00000231329
Gene Name: RP1-225E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-344
0.017
1
7mer
674-686
0.007
0
XLOC_014368
hsa-miR-17-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029349
Biotype: transcript isomorph
Gene id: XLOC_014368
Gene Name: XLOC_014368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-805
0.025
1
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