LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
MIR4313
hsa-miR-17-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
206-230
0.014
1
6mer
2848-2870
0.011
0
AL133245.2
hsa-miR-17-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608925
Biotype: lincRNA
Gene id: ENSG00000272754
Gene Name: AL133245.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1104-1123
0.021
0
9mer
705-725
0.004
Not Conserved
XLOC_003677
hsa-miR-17-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008880
Biotype: transcript isomorph
Gene id: XLOC_003677
Gene Name: XLOC_003677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3277-3291
0.007
3
9mer
1057-1077
0.006
1
6mer
651-668
0.005
3
6mer
3099-3103
0.004
2
7mer
1876-1889
0.003
Not Conserved
TTC28-AS1
hsa-miR-17-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000433317
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2540-2567
0.012
3
7mer
305-331
0.009
5
6mer
773-798
0.002
1
6mer
1694-1713
0.002
4
RP11-61A14.3
hsa-miR-17-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563086
Biotype: lincRNA
Gene id: ENSG00000261088
Gene Name: RP11-61A14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
518-537
0.008
1
8mer
823-846
0.007
1
6mer
1198-1213
0.005
3
6mer
60-87
0.005
1
GRTP1-AS1
hsa-miR-17-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000423246
Biotype: antisense
Gene id: ENSG00000225083
Gene Name: GRTP1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-343
0.025
1
RP11-12A16.3
hsa-miR-17-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437097
Biotype: antisense
Gene id: ENSG00000227068
Gene Name: RP11-12A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
279-302
0.014
2
7mer
53-67
0.011
0
C1QTNF9B-AS1
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000435039
Biotype: antisense
Gene id: ENSG00000205861
Gene Name: C1QTNF9B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-223
0.025
2
XLOC_001212
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001829
Biotype: transcript isomorph
Gene id: XLOC_001212
Gene Name: XLOC_001212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
488-504
0.025
2
PRICKLE2-AS1
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476308
Biotype: antisense
Gene id: ENSG00000241572
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
512-537
0.025
2
RP11-486L19.2
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000536986
Biotype: antisense
Gene id: ENSG00000250685
Gene Name: RP11-486L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
531-551
0.015
1
9mer
247-266
0.009
1
6mer
1452-1468
0.002
0
RP11-433A10.2
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491567
Biotype: lincRNA
Gene id: ENSG00000242618
Gene Name: RP11-433A10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
673-694
0.019
0
6mer
667-679
0.004
0
6mer
516-534
0.003
1
CTD-2313F11.1
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000608466
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-300
0.025
1
LINC01024
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499203
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2353-2366
0.011
0
9mer
1033-1052
0.008
1
6mer
1147-1174
0.003
2
6mer
1895-1917
0.002
0
bP-21264C1.2
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623409
Biotype: lincRNA
Gene id: ENSG00000278932
Gene Name: bP-21264C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-128
0.025
0
SSBP3-AS1
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000361350
Biotype: antisense
Gene id: ENSG00000198711
Gene Name: SSBP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2535-2555
0.014
7
6mer
201-218
0.007
1
7mer
1855-1871
0.004
0
RP11-380D23.1
hsa-miR-17-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503998
Biotype: antisense
Gene id: ENSG00000250511
Gene Name: RP11-380D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
916-930
0.011
1
6mer
1232-1258
0.007
4
7mer
1080-1105
0.004
1
6mer
986-999
0.004
1
RP11-96C23.5
hsa-miR-17-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433214
Biotype: processed_transcript
Gene id: ENSG00000271880
Gene Name: RP11-96C23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
678-704
0.023
1
6mer
1046-1062
0.002
0
XLOC_010219
hsa-miR-17-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020953
Biotype: transcript isomorph
Gene id: XLOC_010219
Gene Name: XLOC_010219
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1119-1141
0.020
Not Conserved
6mer
154-172
0.005
0
AC012593.1
hsa-miR-17-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588944
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
262-288
0.014
1
6mer
582-602
0.011
1
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