LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
AC002454.1
hsa-miR-17-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435695
Biotype: antisense
Gene id: ENSG00000237819
Gene Name: AC002454.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
333-357
0.017
8
6mer
411-431
0.009
7
RAP2C-AS1
hsa-miR-17-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000441399
Biotype: antisense
Gene id: ENSG00000232160
Gene Name: RAP2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2108-2132
0.018
1
7mer
1126-1150
0.002
2
6mer
1092-1112
0.002
0
7mer
1172-1193
0.002
0
6mer
1742-1758
0.002
1
THRB-AS1
hsa-miR-17-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609230
Biotype: lincRNA
Gene id: ENSG00000228791
Gene Name: THRB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-341
0.018
1
6mer
17-40
0.008
3
RP11-557H15.4
hsa-miR-17-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000423028
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-166
0.026
Not Conserved
RP11-504I13.3
hsa-miR-17-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583287
Biotype: antisense
Gene id: ENSG00000263982
Gene Name: RP11-504I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
166-190
0.026
1
RP3-395M20.8
hsa-miR-17-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443892
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
103-127
0.026
1
RP11-104L21.3
hsa-miR-17-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610044
Biotype: lincRNA
Gene id: ENSG00000273160
Gene Name: RP11-104L21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-44
0.026
1
RP11-282K24.3
hsa-miR-17-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4173-4193
0.013
0
6mer
5373-5389
0.006
0
6mer
4618-4637
0.004
1
6mer
581-598
0.003
1
RP5-1022J11.2
hsa-miR-17-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000416237
Biotype: lincRNA
Gene id: ENSG00000232465
Gene Name: RP5-1022J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
41-65
0.026
2
RP11-586K12.10
hsa-miR-17-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1889-1904
0.017
0
6mer
823-848
0.008
0
XLOC_007089
hsa-miR-17-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1174-1197
0.024
1
6mer
9354-9372
0.001
Not Conserved
RP11-290F20.1
hsa-miR-17-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_034124.1
Biotype: lincRNA
Gene id: NR_034124.1 (gene)
Gene Name: RP11-290F20.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-43
0.026
5
RP11-557H15.4
hsa-miR-17-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418837
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-159
0.026
Not Conserved
RP4-717I23.3
hsa-miR-17-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432741
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
231-251
0.026
3
LOC285768
hsa-miR-17-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027116.1
Biotype: lincRNA
Gene id: NR_027116.1 (gene)
Gene Name: LOC285768
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1809-1833
0.017
Not Conserved
7mer
108-135
0.006
Not Conserved
6mer
1067-1083
0.002
Not Conserved
XLOC_012051
hsa-miR-17-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024776
Biotype: transcript isomorph
Gene id: XLOC_012051
Gene Name: XLOC_012051
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-381
0.026
0
LAMTOR5-AS1
hsa-miR-17-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608067
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-625
0.021
1
6mer
529-550
0.004
1
RP11-18B16.2
hsa-miR-17-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428292
Biotype: lincRNA
Gene id: ENSG00000227482
Gene Name: RP11-18B16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
863-882
0.018
2
7mer
549-569
0.007
1
RP11-18J9.3
hsa-miR-17-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547033
Biotype: lincRNA
Gene id: ENSG00000258178
Gene Name: RP11-18J9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1189-1208
0.019
1
6mer
966-992
0.006
3
PRICKLE2-AS1
hsa-miR-17-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460946
Biotype: antisense
Gene id: ENSG00000241572
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
291-316
0.026
2
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