LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-17-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-857B24.5
hsa-miR-17-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555157
Biotype: antisense
Gene id: ENSG00000258949
Gene Name: RP11-857B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-208
0.026
1
XLOC_000318
hsa-miR-17-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001079
Biotype: transcript isomorph
Gene id: XLOC_000318
Gene Name: XLOC_000318
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
151-165
0.006
1
9mer
7012-7031
0.003
1
9mer
6676-6695
0.003
1
6mer
891-910
0.003
4
6mer
4644-4660
0.003
4
7mer
2050-2060
0.003
1
6mer
5547-5570
0.002
1
6mer
1247-1273
0.002
0
6mer
3885-3911
0.001
0
AP000265.1
hsa-miR-17-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000565959
Biotype: lincRNA
Gene id: ENSG00000261610
Gene Name: AP000265.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
28-54
0.011
4
7mer
1227-1242
0.009
1
6mer
327-354
0.004
1
6mer
1575-1588
0.003
1
CASC22
hsa-miR-17-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569713
Biotype: lincRNA
Gene id: ENSG00000260887
Gene Name: CASC22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-254
0.017
1
6mer
352-375
0.009
3
CTA-212A2.3
hsa-miR-17-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2777-2797
0.004
0
9mer
13519-13539
0.004
0
7mer
8303-8319
0.004
1
9mer
6827-6847
0.004
1
9mer
7168-7188
0.003
0
9mer
3378-3402
0.003
0
6mer
12454-12476
0.002
1
6mer
9935-9953
0.001
0
7mer
12666-12690
0.001
Not Conserved
CTD-2378E12.1
hsa-miR-17-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619889
Biotype: lincRNA
Gene id: ENSG00000273674
Gene Name: CTD-2378E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-69
0.026
0
LINC01483
hsa-miR-17-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433856
Biotype: lincRNA
Gene id: ENSG00000227517
Gene Name: LINC01483
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2814-2837
0.011
1
6mer
559-585
0.004
1
6mer
1039-1047
0.003
2
6mer
856-872
0.003
2
7mer
1479-1493
0.003
1
9mer
1796-1820
0.002
Not Conserved
RP11-96K19.4
hsa-miR-17-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3667-3689
0.009
1
6mer
5918-5932
0.007
0
6mer
1686-1713
0.006
1
6mer
3468-3482
0.003
0
RP11-254F19.3
hsa-miR-17-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569104
Biotype: lincRNA
Gene id: ENSG00000260340
Gene Name: RP11-254F19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-181
0.026
1
AP001605.4
hsa-miR-17-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447384
Biotype: lincRNA
Gene id: ENSG00000236332
Gene Name: AP001605.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-158
0.026
0
LINC00029
hsa-miR-17-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370341
Biotype: lincRNA
Gene id: ENSG00000125514
Gene Name: LINC00029
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-96
0.026
1
HCG18
hsa-miR-17-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444126
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-113
0.021
1
6mer
1039-1062
0.002
2
6mer
1304-1308
0.002
0
6mer
1847-1872
0.001
0
RP11-333A23.4
hsa-miR-17-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520259
Biotype: lincRNA
Gene id: ENSG00000253967
Gene Name: RP11-333A23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1186-1205
0.009
1
9mer
78-98
0.008
1
6mer
2043-2065
0.005
1
6mer
843-864
0.004
2
HCG18
hsa-miR-17-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454129
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-113
0.021
1
6mer
1039-1062
0.002
2
6mer
1304-1308
0.002
0
6mer
1847-1872
0.001
0
CTD-2525I3.6
hsa-miR-17-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594379
Biotype: antisense
Gene id: ENSG00000269535
Gene Name: CTD-2525I3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1718-1742
0.011
0
6mer
9-30
0.005
0
7mer
421-436
0.005
Not Conserved
6mer
932-953
0.003
1
6mer
989-1013
0.002
1
LINC01207
hsa-miR-17-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507311
Biotype: lincRNA
Gene id: ENSG00000248771
Gene Name: LINC01207
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2862-2880
0.016
1
6mer
860-878
0.004
1
9mer
1295-1319
0.003
0
6mer
2041-2060
0.002
1
RP11-153M7.5
hsa-miR-17-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505051
Biotype: antisense
Gene id: ENSG00000249309
Gene Name: RP11-153M7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
456-475
0.026
1
XLOC_005208
hsa-miR-17-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011743
Biotype: transcript isomorph
Gene id: XLOC_005208
Gene Name: XLOC_005208
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4507-4531
0.021
0
7mer
3703-3726
0.003
Not Conserved
6mer
2721-2736
0.002
0
RP11-338L22.2
hsa-miR-17-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584258
Biotype: antisense
Gene id: ENSG00000263477
Gene Name: RP11-338L22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-660
0.008
1
6mer
298-321
0.006
1
6mer
493-506
0.005
1
6mer
542-566
0.004
1
6mer
458-479
0.004
0
XLOC_010017
hsa-miR-17-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020167
Biotype: transcript isomorph
Gene id: XLOC_010017
Gene Name: XLOC_010017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2061-2074
0.014
5
6mer
3-23
0.006
1
6mer
1240-1260
0.006
3
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept