LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
AC012506.3
hsa-miR-17-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426527
Biotype: lincRNA
Gene id: ENSG00000223634
Gene Name: AC012506.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-418
0.022
1
6mer
348-375
0.005
2
RP11-359K18.4
hsa-miR-17-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609669
Biotype: sense_intronic
Gene id: ENSG00000272574
Gene Name: RP11-359K18.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-346
0.015
0
9mer
380-404
0.012
1
RP1-168L15.5
hsa-miR-17-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000568025
Biotype: antisense
Gene id: ENSG00000261420
Gene Name: RP1-168L15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1068-1092
0.013
1
8mer
333-353
0.008
1
9mer
749-773
0.004
Not Conserved
6mer
648-672
0.002
0
LINC00645
hsa-miR-17-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557399
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3465-3477
0.006
1
7mer
2043-2068
0.005
1
7mer
2406-2426
0.004
1
7mer
661-676
0.004
1
6mer
1364-1376
0.003
1
6mer
2886-2909
0.002
0
6mer
1715-1736
0.002
0
6mer
2131-2148
0.001
3
RP11-629B11.5
hsa-miR-17-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000600169
Biotype: antisense
Gene id: ENSG00000269559
Gene Name: RP11-629B11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
760-776
0.009
1
7mer
132-140
0.008
1
6mer
1045-1069
0.005
4
6mer
1284-1301
0.004
1
6mer
1265-1281
0.001
1
DNM3OS
hsa-miR-17-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6742-6766
0.009
1
7mer
4574-4599
0.005
1
6mer
754-771
0.005
1
6mer
2672-2692
0.002
3
6mer
5641-5653
0.002
3
6mer
4728-4752
0.002
1
6mer
4923-4934
0.002
5
RP11-869B15.1
hsa-miR-17-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000598393
Biotype: lincRNA
Gene id: ENSG00000269290
Gene Name: RP11-869B15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-274
0.019
0
7mer
516-534
0.007
0
KMT2E-AS1
hsa-miR-17-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024586.1
Biotype: lincRNA
Gene id: NR_024586.1 (gene)
Gene Name: KMT2E-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1114-1134
0.017
1
6mer
2358-2370
0.004
8
6mer
561-587
0.004
2
6mer
1740-1754
0.002
1
RP11-485G4.2
hsa-miR-17-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608374
Biotype: lincRNA
Gene id: ENSG00000272565
Gene Name: RP11-485G4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3968-3992
0.006
2
9mer
3457-3477
0.005
1
9mer
685-712
0.005
0
9mer
3837-3857
0.004
0
9mer
2582-2606
0.003
1
6mer
1284-1299
0.002
1
6mer
1899-1923
0.002
1
RP5-1065J22.8
hsa-miR-17-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608574
Biotype: antisense
Gene id: ENSG00000273382
Gene Name: RP5-1065J22.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2156-2175
0.007
Not Conserved
9mer
699-723
0.006
1
9mer
2288-2307
0.006
1
9mer
1044-1068
0.004
1
7mer
1671-1692
0.003
1
RP11-362F19.1
hsa-miR-17-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509161
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1008
0.022
1
6mer
2019-2035
0.005
4
DISC2
hsa-miR-17-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_002227.2
Biotype: antisense
Gene id: NR_002227.2 (gene)
Gene Name: DISC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3589-3612
0.020
0
7mer
2412-2435
0.005
0
6mer
1869-1883
0.002
2
TMEM256-PLSCR3
hsa-miR-17-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037719.1
Biotype: sense
Gene id: NR_037719.1 (gene)
Gene Name: TMEM256-PLSCR3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-40
0.010
7
8mer
203-222
0.009
1
6mer
785-806
0.004
6
6mer
403-419
0.003
1
AC007405.4
hsa-miR-17-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000624287
Biotype: lincRNA
Gene id: ENSG00000234350
Gene Name: AC007405.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-254
0.027
1
TTN-AS1
hsa-miR-17-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419746
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4418-4435
0.011
11
6mer
342-358
0.010
9
7mer
3512-3526
0.003
8
6mer
3442-3457
0.002
4
RP11-166B2.3
hsa-miR-17-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568144
Biotype: sense_intronic
Gene id: ENSG00000261560
Gene Name: RP11-166B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-870
0.014
0
9mer
84-108
0.013
1
CTC-471J1.2
hsa-miR-17-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000569091
Biotype: sense_overlapping
Gene id: ENSG00000260160
Gene Name: CTC-471J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-170
0.027
1
XLOC_013577
hsa-miR-17-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028233
Biotype: transcript isomorph
Gene id: XLOC_013577
Gene Name: XLOC_013577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1359-1379
0.027
1
LINC00608
hsa-miR-17-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432733
Biotype: lincRNA
Gene id: ENSG00000236445
Gene Name: LINC00608
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
851-870
0.015
0
8mer
1984-2005
0.004
1
9mer
1315-1339
0.003
1
6mer
1277-1297
0.002
1
6mer
1628-1644
0.002
1
XLOC_004978
hsa-miR-17-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010460
Biotype: transcript isomorph
Gene id: XLOC_004978
Gene Name: XLOC_004978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1396-1412
0.016
9
7mer
748-771
0.006
1
7mer
649-670
0.004
1
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